- Feb 10, 2025
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Baptiste Imbert authored
docs: adding missing information regarding the FAI input now required in protein mode and automatically generated in genome mode
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Baptiste Imbert authored
Adds the synteny coverage to the synteny report and closes the associated issue.
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Baptiste Imbert authored
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Baptiste Imbert authored
fix: specifiying diamond package version for conda since the current one failed to create the diamond DB
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Baptiste Imbert authored
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- Feb 07, 2025
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
feat: adding the synteny coverage at the chromosome and genome scale. For that, a new input was introduced, the .fai to obtain chromosome sizes. It is generated for a genome input, but needs to be given for a protein input.
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Baptiste Imbert authored
feat: adding the synteny coverage at the chromosome and genome scale. For that, a new input was introduced, the .fai to obtain chromosome sizes. It is generated for a genome input, but needs to be given for a protein input.
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- Feb 06, 2025
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
fix: testing new builds for orthofinder 2.5.5 since orthofinder 3.0.1b1 does not work with the example_data
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- Feb 05, 2025
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
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- Feb 04, 2025
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Baptiste Imbert authored
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- Feb 03, 2025
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Baptiste Imbert authored
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- Jan 14, 2025
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Baptiste Imbert authored
Resolve "Use bioconda to run MCScanX" Closes #32 See merge request !2
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Closes #32.
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- Jan 06, 2025
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Baptiste Imbert authored
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Baptiste Imbert authored
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- Dec 12, 2024
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Baptiste Imbert authored
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- Dec 07, 2024
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Baptiste Imbert authored
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Baptiste Imbert authored
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- Nov 19, 2024
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Baptiste Imbert authored
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- Nov 08, 2024
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Baptiste Imbert authored
fix: intra-species syntenic blocks comparing the same chromosome (e.g. Mt04&Mt04) were not properly dealed with.
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- Nov 07, 2024
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Baptiste Imbert authored
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Baptiste Imbert authored
bug: the statistics were incorrect. The species concerned for the block size was not mentioned so the values were wrong. Furthermore, the sd for the block gene count was missing.
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- Nov 06, 2024
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Baptiste Imbert authored
feat: adding a new module of descriptive statistics for MCScanX collinearity file (number of blocks inter/intra, their length, gene content, etc.
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Baptiste Imbert authored
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Baptiste Imbert authored
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- Oct 30, 2024
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
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Baptiste Imbert authored
fix: adding a global maxForks since some servers have a fork limit which result in errors such as 'OpenBLAS blas_thread_init'
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- Oct 29, 2024
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Baptiste Imbert authored
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Baptiste Imbert authored
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