Commits · master · gryc / gryc-utilities · GitLab

Snippets Groups Projects

Mar 04, 2025
- Add function to truncate feature from the right and select feature within intervals. · d4d73d92
  Hugo Devillers authored 1 week ago
  
  d4d73d92
Mar 03, 2025
- Complete the function to truncate feature on the left side. · 64f8ea1b
  Hugo Devillers authored 1 week ago
  
  64f8ea1b
Mar 02, 2025
- Add a package to manipulate feature locations. · e095042f
  Hugo Devillers authored 1 week ago
  
  e095042f
Mar 01, 2025
- Add script and packages to reverse complement annotated sequences. · ab51b87f
  Hugo Devillers authored 2 weeks ago
  
  ab51b87f
- Add a script to copy qualifier between to annotations. · 13619292
  Hugo Devillers authored 2 weeks ago
  
  13619292
Feb 28, 2025
- Decrease JSON module version requirement. · 76400524
  Hugo Devillers authored 2 weeks ago
  
  76400524
- Turn assemblyStat.pl as deprecated. · 21c4d245
  Hugo Devillers authored 2 weeks ago
  
  21c4d245
- Update README.md and MANIFEST files. · ce4b4ca5
  Hugo Devillers authored 2 weeks ago
  
  ce4b4ca5
- Add a script to compute assembly statistics. · 5cd8d576
  Hugo Devillers authored 2 weeks ago
  
  5cd8d576
- Fix header names in sequenceStatistics and add sequenceContentStatistics.pl script. · 47f21e0a
  Hugo Devillers authored 2 weeks ago
  
  47f21e0a
- Add function to compute sequence content statistics. · a3565463
  Hugo Devillers authored 2 weeks ago
  
  a3565463
- Fix computation issues in assemblyStatistic function. · 6931a645
  Hugo Devillers authored 2 weeks ago
  
  6931a645
- Fix typos in variable names. · 8570af1a
  Hugo Devillers authored 2 weeks ago
  
  8570af1a
- Add function to define statistics headers. · 1a01beef
  Hugo Devillers authored 2 weeks ago
  
  1a01beef
- Add a function to check rendering formats. · 753421ba
  Hugo Devillers authored 2 weeks ago
  
  753421ba
- Add a package to compute statistics on sequences. · 14d08349
  Hugo Devillers authored 2 weeks ago
  
  14d08349
- Fix uncompleted documentation and typos (WIP). · 3060d224
  Hugo Devillers authored 2 weeks ago
  
  3060d224
Feb 23, 2025
- Add a package to render table data. · d491683b
  Hugo Devillers authored 3 weeks ago
  
  d491683b
Feb 21, 2025
- Remove useless MANIFEST file. · 509cd339
  Hugo Devillers authored 3 weeks ago
  
  509cd339
- Update Build.PL script. · 88f38524
  Hugo Devillers authored 3 weeks ago
  
  88f38524
- Enhance featureIntronStat.pl script. · 93add6f2
  Hugo Devillers authored 3 weeks ago
  
  93add6f2
- Update MANIFEST file. · 10c12795
  Hugo Devillers authored 3 weeks ago
  
  10c12795
Feb 20, 2025
- Update the README.md. · 6017f4a6
  Hugo Devillers authored 3 weeks ago
  
  6017f4a6
- Rename tRNAscan2GFF3.pl to tRNAscanToGFF3.pl. · 6860b0af
  Hugo Devillers authored 3 weeks ago
  
  6860b0af
- Completed the featureIntronStat.pl script. · d4706111
  Hugo Devillers authored 3 weeks ago
  
  d4706111
Feb 19, 2025
- Add a script that computes stats on introns. · edc23d41
  Hugo Devillers authored 3 weeks ago
  
  edc23d41
Feb 12, 2025
- Fix and erreur in featureGrouper module importation. · bbea23ec
  Hugo Devillers authored 1 month ago
  
  bbea23ec
May 06, 2022
- Fix component counting. · 0f4e41b3
  Hugo Devillers authored 2 years ago
  
  0f4e41b3
- Fix argument value attribution. · c737ce6c
  Hugo Devillers authored 2 years ago
  
  c737ce6c
- Fix linkage types and add a option to discard single component scaffold in AGP. · 4c48bbe9
  Hugo Devillers authored 2 years ago
  
  4c48bbe9
May 05, 2022
- Add a script to convert scaffolded assemblies into contig set and agp file. · 154f4d5b
  Hugo Devillers authored 2 years ago
  
  154f4d5b
Mar 14, 2022
- Add a script to merge sequence together. · c5444d96
  Hugo Devillers authored 3 years ago
  
  c5444d96
Mar 12, 2022
- Fix: multiple locus_tag when translating CDS. · b2384302
  Hugo Devillers authored 3 years ago
  
  b2384302
- Merge branch 'master' of bitbucket.org:hdevillers/gryc-utilities · 707aee4d
  Hugo Devillers authored 3 years ago
  
  707aee4d
- Fix: return an error when editing a sequence with an unknown ID. · 0db3bb5d
  Hugo Devillers authored 3 years ago
  
  0db3bb5d
Feb 24, 2022
- Add a script to split fasta sequence on gaps (Ns). · 236298d5
  Hugo Devillers authored 3 years ago
  
  236298d5
Feb 13, 2022
- Add a script to add assembly_gap features. · a20e393a
  Hugo Devillers authored 3 years ago
  
  a20e393a
- Change tRNAsan version. · 12d89486
  Hugo Devillers authored 3 years ago
  
  12d89486
Jan 17, 2022
- Fix and complete documentation of scripts (WIP). · 999d8990
  Hugo Devillers authored 3 years ago
  
  999d8990
Jan 15, 2022
- Add a script for gap statistics. · b5b71d3f
  Hugo Devillers authored 3 years ago
  
  b5b71d3f