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Issues 16
Open: 0 Closed: 16

Evidence collection

Collected 1 year ago

Release notes

Related merge : !8

New features

  • Add fastq md5sum hash at readset level in NGL-Bi #53
  • Add demultiplexStat Treatment in NGL-Bi #60
  • Remove the nextflow workdir if pipeline succeeded and not in dev mode #62
  • Idenpendance of fastp subset read number from subsampling step using seqtk. New arg : --fastp_n_reads INT #68
  • Automatic reports parsing in DTM mode (--DTM_mode) #69
  • Genobioinfo configuration available using --host genobioinfo #70

Changes and improvements

  • Skip subsampling step argument : --no_subset #40
  • Easy to use subsampling configuration, with read number wanted --miseq_subset_seq INT or --nova_subset_seq INT #63
  • Heavy re-organization of every configuration files #64
  • Increase ressources : memory for md5dum generation #65, time for fastqc #23
  • BWA now aligns simultaneously on R1 and R2 #66
  • Use the qualimap 's shared_module #67

Bugs fixed

  • Improve glob pattern of fastq #56
  • Fix index counting when sample name is a subset of another #57