Related merge : !8

New features

• Add fastq md5sum hash at readset level in NGL-Bi #53
• Add demultiplexStat Treatment in NGL-Bi #60
• Remove the nextflow workdir if pipeline succeeded and not in dev mode #62
• Idenpendance of fastp subset read number from subsampling step using seqtk. New arg : --fastp_n_reads INT #68
• Automatic reports parsing in DTM mode (--DTM_mode) #69
• Genobioinfo configuration available using --host genobioinfo #70

Changes and improvements

• Skip subsampling step argument : --no_subset #40
• Easy to use subsampling configuration, with read number wanted --miseq_subset_seq INT or --nova_subset_seq INT #63
• Heavy re-organization of every configuration files #64
• Increase ressources : memory for md5dum generation #65, time for fastqc #23
• BWA now aligns simultaneously on R1 and R2 #66
• Use the qualimap 's shared_module #67

Bugs fixed

• Improve glob pattern of fastq #56
• Fix index counting when sample name is a subset of another #57