Milestone
Evidence collection
V1.6.0-evidences-610.json a4d14090
Collected 1 year ago
Release notes
Related merge : !8
New features
- Add fastq md5sum hash at readset level in NGL-Bi #53
- Add demultiplexStat Treatment in NGL-Bi #60
- Remove the nextflow workdir if pipeline succeeded and not in dev mode #62
- Idenpendance of fastp subset read number from subsampling step using seqtk. New arg :
--fastp_n_reads INT
#68 - Automatic reports parsing in DTM mode (
--DTM_mode
) #69 - Genobioinfo configuration available using
--host genobioinfo
#70
Changes and improvements
- Skip subsampling step argument :
--no_subset
#40 - Easy to use subsampling configuration, with read number wanted
--miseq_subset_seq INT
or--nova_subset_seq INT
#63 - Heavy re-organization of every configuration files #64
- Increase ressources : memory for md5dum generation #65, time for fastqc #23
- BWA now aligns simultaneously on R1 and R2 #66
- Use the qualimap 's shared_module #67