Massive changes in the code occurred in the version :
The workflow now use a new version of Snakemake>=8.4.7 that efficiently manage computational resources across multiple nodes using the SLURM executor plugin.
The workflow got simplified by reducing the code size, unifying rules, and improving clarity with better comments and advanced Snakemake functions.
Codbase got reduced from 1726 lines to 1105 and the number of rules got reduced from 48 to 20.
Now a script dynamically launch the right hifiasm command
Now a script dynamically launch purge_dups or not based on user choice
New features got added such as QUAST, RagTag and LTR elements identification.
Many options got added in the workflow to allow user to fine tune the execution
Resources allocated to each rules got revised
Greatly increase the verbose of the workflow
All tools got updated, noticeably hifiasm got upgraded from version 0.16.1 to 0.24.0-r703
