diff --git a/src/components/BaseRadioFieldset.vue b/src/components/BaseRadioFieldset.vue
index 639f6c7e1ffd3781e43f1b349c7dd86a51fdaa6c..c1bb2adb411c6148234a08fe090a46ea00de2119 100644
--- a/src/components/BaseRadioFieldset.vue
+++ b/src/components/BaseRadioFieldset.vue
@@ -34,18 +34,19 @@ defineEmits<{
}>()
defineSlots<{
- /** Custom whole entry (input & label). */
- default(props: {
- /** The data selected with the radio, in the `dataFieldPath` field of the selected entry. */
+ /** Custom item appearance (input & label). */
+ item: (props: {
+ /** The data selected with the radio, in the `dataFieldPath` field of the
+ * selected entry. */
selectedData: any
/** The value of the entry to display. */
currentValue: T
- }): any
- /** Custom label for the radio button. */
- entryLabel(props: {
+ }) => any
+ /** Custom item label. */
+ 'item-label': (props: {
/** The value of the entry to display. */
currentValue: T
- }): any
+ }) => any
}>()
/**
@@ -64,13 +65,13 @@ const selectedData = ref<any>()
:key="index"
class="flex cursor-pointer items-center gap-2 pl-4 text-lg"
>
- <slot :selected-data="selectedData" :current-value="value">
+ <slot name="item" :selected-data="selectedData" :current-value="value">
<RadioButton
v-model="selectedData"
:value="dataFieldPath ? _get(value, dataFieldPath) : value"
@update:model-value="$emit('change', selectedData)"
/>
- <slot name="entryLabel" :current-value="value">
+ <slot name="item-label" :current-value="value">
{{
labelFieldPath
? _get(value, labelFieldPath)
diff --git a/src/components/InteractionBoard.vue b/src/components/InteractionBoard.vue
index a5f5f5b057216f7f3cac6918403764e34480b000..a6ffd6ae5b0fea82f3ff7907dd1b2d4ba67565f4 100644
--- a/src/components/InteractionBoard.vue
+++ b/src/components/InteractionBoard.vue
@@ -23,6 +23,7 @@ import { formatGuideSubtype } from '@/utils/textFormatting'
* Component props
*/
const props = defineProps<{
+ /** The list of the interactions available for choice to visualise. */
interactionList: InteractionCardModel[]
/** Field used to dedup `interactionList` for first selection,
* must point to a primitive type */
@@ -36,6 +37,24 @@ const props = defineProps<{
selectionFieldLegend2?: string
}>()
+/**
+ * Component slots.
+ */
+defineSlots<{
+ /** Custom item labels for first radio fieldset. */
+ 'item-label-1': (props: {
+ /** The value of the entry to display. */
+ currentValue: InteractionCardModel
+ }) => void
+ /** Custom item labels for second radio fieldset (if present). */
+ 'item-label-2': (props: {
+ /** The value of the entry to display. */
+ currentValue: InteractionCardModel
+ }) => void
+ /** Custom message to show when selection is not complete. */
+ 'selection-incomplete-message': () => void
+}>()
+
watch(
() => props.selectionFieldPath1,
(newSelectionField1: string) => {
@@ -118,8 +137,8 @@ const selectedValue2 = ref<any>()
:data-field-path="selectionFieldPath1"
@change="updateSelection1"
>
- <template #entryLabel="{ currentValue }">
- <slot name="radioEntryLabel1" :current-value="currentValue">{{
+ <template #item-label="{ currentValue }">
+ <slot name="item-label-1" :current-value="currentValue">{{
_get(currentValue, props.selectionFieldPath1)
}}</slot>
</template>
@@ -136,8 +155,11 @@ const selectedValue2 = ref<any>()
:data-field-path="selectionFieldPath2"
@change="updateSelection2"
>
- <template #entryLabel="{ currentValue }">
- <slot name="radioEntryLabel2" :current-value="currentValue"></slot>
+ <template #item-label="{ currentValue }">
+ <slot name="item-label-2" :current-value="currentValue">{{
+ props.selectionFieldPath2 &&
+ _get(currentValue, props.selectionFieldPath2)
+ }}</slot>
</template>
</BaseRadioFieldset>
</form>
@@ -146,7 +168,7 @@ const selectedValue2 = ref<any>()
class="col-span-2 m-auto"
:interaction="selectedInteraction"
>
- <template v-if="selectedInteraction" #card-title>
+ <template v-if="selectedInteraction" #title>
<div class="text-center">
{{ selectedInteraction.guide.name || selectedInteraction.guide.id }} /
{{ selectedInteraction.target.name || selectedInteraction.target.id }}
@@ -155,7 +177,7 @@ const selectedValue2 = ref<any>()
</div>
</template>
- <template v-if="selectedInteraction" #card-subtitle>
+ <template v-if="selectedInteraction" #subtitle>
<div class="text-center">
{{ formatGuideSubtype(selectedInteraction.guide.subtype) }} /
{{ selectedInteraction.target.type }} :
@@ -164,11 +186,12 @@ const selectedValue2 = ref<any>()
</div>
</template>
- <template #card-content-undef-prop>
+ <template #undefined-interaction-message>
<span class="italic text-slate-400">
<strong>←</strong>
- Please select a target & modification on the left to visualise the
- interaction
+ <slot name="selection-incomplete-message">
+ Please do a selection on the left to visualise the interaction.
+ </slot>
</span>
</template>
</InteractionCard>
diff --git a/src/components/InteractionCard.vue b/src/components/InteractionCard.vue
index 597e79b253600314a34ab2681ba260b5568a18bd..17b22d4f8e12651b79c2982f58733e6244b1997e 100644
--- a/src/components/InteractionCard.vue
+++ b/src/components/InteractionCard.vue
@@ -79,16 +79,26 @@ export interface InteractionCardModel {
}[]
}
-defineSlots<{
- 'card-title': () => void
- 'card-subtitle': () => void
- 'card-content-undef-prop': () => void
-}>()
-
+/**
+ * Component props.
+ */
const props = defineProps<{
+ /** The interaction to visualise. */
interaction: InteractionCardModel | undefined
}>()
+/**
+ * Component slots.
+ */
+defineSlots<{
+ /** Custom card title. */
+ title: () => void
+ /** Custom card subtitle. */
+ subtitle: () => void
+ /** Custom message to show when `interaction` prop is not defined. */
+ 'undefined-interaction-message': () => void
+}>()
+
const CDFormattedInteraction = computed<InteractionCDModel | undefined>(() => {
const duplex = props.interaction?.duplexes[0]
@@ -205,11 +215,11 @@ const HACAFormattedInteraction = computed<InteractionHACAModel | undefined>(
<template>
<Card>
- <template v-if="$slots['card-title']" #title>
- <slot name="card-title"></slot>
+ <template v-if="$slots['title']" #title>
+ <slot name="title"></slot>
</template>
- <template v-if="$slots['card-subtitle']" #subtitle>
- <slot name="card-subtitle"></slot>
+ <template v-if="$slots['subtitle']" #subtitle>
+ <slot name="subtitle"></slot>
</template>
<template #content>
<template v-if="interaction">
@@ -221,10 +231,16 @@ const HACAFormattedInteraction = computed<InteractionHACAModel | undefined>(
v-else-if="HACAFormattedInteraction"
:interaction="HACAFormattedInteraction"
/>
+ <div
+ v-else
+ class="rounded-lg border-2 border-dashed border-slate-300 p-4 italic text-slate-400"
+ >
+ Not enough information to compute the duplex.
+ </div>
</template>
<template v-else>
- <slot name="card-content-undef-prop"
- >Provide a guide, modification & interaction to visualise it.
+ <slot name="undefined-interaction-message">
+ Provide a guide, modification & interaction to visualise it.
</slot>
</template>
</template>
diff --git a/src/components/SequenceBoard.vue b/src/components/SequenceBoard.vue
index 0dd450ba49abf85bc812dd87c264d6dc495a203c..ef96ffd118d1cc6bbe6671f3cfbfa912fff6e188 100644
--- a/src/components/SequenceBoard.vue
+++ b/src/components/SequenceBoard.vue
@@ -17,9 +17,10 @@ import IconFa6RegularCopy from '~icons/fa6-regular/copy'
import {
useElementBounding,
useElementVisibility,
+ useMutationObserver,
useResizeObserver
} from '@vueuse/core'
-import { inRange as _inRange, range as _range, find as _find } from 'lodash-es'
+import { inRange as _inRange } from 'lodash-es'
/**
* Types imports
*/
@@ -28,42 +29,49 @@ import { type TailwindDefaultColorNameModel } from '@/typings/styleTypes'
* Utils imports
*/
import { promisedWait } from '@/utils/promise'
+import { range } from '@/utils/numbers'
+/**
+ * A group of nucleotides to highlight on the sequence.
+ */
export interface highlightGroupModel {
- /** First position to highlight (starts at 1) */
+ /** First position to highlight (starts at 1). */
start: number
- /** Last position to highlight (included) */
+ /** Last position to highlight (included). */
end: number
- /** Color(s) to use to highlight the group */
+ /** Color(s) to use to highlight the group. */
color: TailwindDefaultColorNameModel
}
+/**
+ * The state of the clipboard.
+ */
enum ClipboardStateModel {
- // Clipboard is idle
+ /** Clipboard is idle. */
Idle,
- // Something is being copied into the clipboard
+ /** Something is being copied into the clipboard. */
Busy,
- // Post-copy tasks are running before releasing the clipboard
+ /** Post-copy tasks are running before releasing the clipboard. */
PostCopy
}
/**
- * Component props
+ * Component props.
*/
const props = defineProps<{
/** The sequence to represent. */
sequence: string
- /** Groups to highlight on the sequence */
+ /** Groups to highlight on the sequence. */
highlightedGroups?: { [groupId: string]: highlightGroupModel }
}>()
/**
- * Current state of the clipboard availability
+ * Current state of the clipboard availability.
*/
const clipboardState = ref<ClipboardStateModel>(ClipboardStateModel.Idle)
/**
- * Copies the sequence to the clipboard, and handles the different states of it
+ * Copies the sequence to the clipboard, and handles the different states of it.
*/
const sequenceToClipboard = () => {
clipboardState.value = ClipboardStateModel.Busy
@@ -80,19 +88,19 @@ const sequenceToClipboard = () => {
}
/**
- * Nucl. count size of the groups in which the sequence is split
+ * Size (in term of nucl.) of the groups into which the sequence is divided.
*/
const nucleotideGroupsSize = ref(10)
/**
- * Number of groups in which the sequence is to be split
+ * Number of groups in which the sequence is divided.
*/
const nucleotideGroupsCount = computed(() =>
Math.ceil(props.sequence.length / nucleotideGroupsSize.value)
)
/**
- * The sequence, split in groups of selected size, as an array
+ * The sequence, split in groups of selected size, as an array.
*/
const splitSequence = computed(() =>
Array.from({ length: nucleotideGroupsCount.value }, (_, i) =>
@@ -104,10 +112,10 @@ const splitSequence = computed(() =>
)
/**
- * Wether a nucleotide is in a given highlighted group or not
- * @param position The position of the nucleotide to check
- * @param groupId The id of the group to check for
- * @returns `true` if position if in the given group, `false` otherwise
+ * Wether a nucleotide is in a given highlighted group or not.
+ * @param position The position of the nucleotide to check.
+ * @param groupId The id of the group to check for.
+ * @returns `true` if position if in the given group, `false` otherwise.
*/
const isInHighlightedGroup = (position: number, groupId: string): boolean => {
const highlightedGroup = props.highlightedGroups?.[groupId]
@@ -118,9 +126,9 @@ const isInHighlightedGroup = (position: number, groupId: string): boolean => {
}
/**
- * Gets the IDs of the highlighted groups containing a nucleotide
- * @param position The position of the nucleotide for which to get group IDs
- * @returns A list of the IDs of the highlighted groups containing the nucleotide
+ * Gets the IDs of the highlighted groups containing a nucleotide.
+ * @param position The position of the nucleotide for which to get group IDs.
+ * @returns A list of the IDs of the highlighted groups containing the nucleotide.
*/
const highlightedGroupIdsContaining = (position: number): string[] =>
props.highlightedGroups
@@ -130,46 +138,45 @@ const highlightedGroupIdsContaining = (position: number): string[] =>
: []
/**
- * Whether a nucleotide is in any highlighted group
- * @param position The position of the nucleotide to check
- * @returns `true` if the nucleotide is in any highlighted group, `false` otherwise
+ * Whether a nucleotide is in any highlighted group.
+ * @param position The position of the nucleotide to check.
+ * @returns `true` if the nucleotide is in any highlighted group, `false` otherwise.
*/
const isInAnyHighlightedGroup = (position: number): boolean =>
!!highlightedGroupIdsContaining(position).length
/**
- * Whether a nucleotide is the start of an highlighted group
- * @param position The position of the nucleotide to check
- * @returns `true` if the nucleotide is the start of an highlighted group, `false` otherwise
+ * Set of all the boundary positions (start & end) of all highlighted groups on
+ * the sequence.
*/
-const isHighlightedGroupStart = (position: number): boolean =>
- !!highlightedGroupIdsContaining(position).find(
- (groupId) => props.highlightedGroups?.[groupId]?.start === position
- )
+const highlightedGroupsBoundaries = computed(
+ () =>
+ props.highlightedGroups &&
+ Object.values(props.highlightedGroups).reduce(
+ (highlightedGroupsBoundaries, highlightedGroup) =>
+ highlightedGroupsBoundaries
+ .add(highlightedGroup.start)
+ .add(highlightedGroup.end),
+ new Set<number>()
+ )
+)
/**
- * Whether a nucleotide is the end of an highlighted group
- * @param position The position of the nucleotide to check
- * @returns `true` if the nucleotide is the end of an highlighted group, `false` otherwise
+ * Whether a nucleotide is a boundary position (start or end) of an highlighted
+ * group.
+ * @param position The position of the nucleotide to check.
+ * @returns `true` if the nucleotide is the start of an highlighted group, `false` otherwise.
*/
-const isHighlightedGroupEnd = (position: number): boolean =>
- !!highlightedGroupIdsContaining(position).filter(
- (groupId) => props.highlightedGroups?.[groupId]?.end === position
- ).length
+const isHighlightedGroupBoundary = (position: number): boolean =>
+ !!highlightedGroupsBoundaries.value?.has(position)
/**
- * Gets the ID of the highlighted group which starts or end with a nucleotide.
- * @param position The position of the nucleotide to check.
- * @returns The ID of if the highlighted group which starts or end with the
- * nucleotide, `undefined` if there is none.
+ * Composes the Tailwind color name in which to paint a nucleotide based on its
+ * position.
+ * @param position The position for which to compose the color.
+ * @returns `slate` if there is no or several boxes at the given position, the
+ * Tailwind color name of the box if there is only one.
*/
-const idOfGroupStartingOrEndingWith = (position: number): string | undefined =>
- props.highlightedGroups &&
- Object.entries(props.highlightedGroups).find(
- ([_groupId, highlightedGroup]) =>
- highlightedGroup.start === position || highlightedGroup.end === position
- )?.[0]
-
const composeHighlightedPositionColor = (
position: number
): TailwindDefaultColorNameModel => {
@@ -181,37 +188,33 @@ const composeHighlightedPositionColor = (
}
/**
- * Sequence & the directions labels container DOM `HTMLElement`
+ * Sequence & the directions labels container DOM `HTMLElement`.
*/
const sequenceAndLabelsContainerElement = ref<HTMLElement>()
/**
- * Sequence container DOM `HTMLElement`
+ * Sequence container DOM `HTMLElement`.
*/
const sequenceContainerElement = ref<HTMLElement>()
/**
- * Split sequence groups DOM `HTMLElement` array
+ * Split sequence groups DOM `HTMLElement` array.
*/
const sequenceGroupElements = ref<HTMLElement[]>([])
/**
- * Labels of the positions of the first nucleotide of each group DOM `HTMLElement`
+ * Labels of the positions of the first nucleotide of each group DOM `HTMLElement`.
* array
*/
const groupsPositionsElements = ref<HTMLElement[]>([])
/**
- * First nucleotide of each box DOM `HTMLElement` array
- */
-const boxFirstNucleotideElements = ref<HTMLElement[]>([])
-/**
- * Last nucleotide of each box DOM `HTMLElement` array
+ * First & last nucleotides of each box DOM `HTMLElement` array.
*/
-const boxLastNucleotideElements = ref<HTMLElement[]>([])
+const boxBoundaryElements = ref<HTMLElement[]>([])
/**
- * Boxes DOM `HTMLElement` array
+ * Boxes DOM `HTMLElement` array.
*/
const boxElements = ref<HTMLElement[]>([])
/**
- * Last split sequence group DOM `HTMLElement`
+ * Last split sequence group DOM `HTMLElement`.
*/
const lastSequenceGroupElement = computed(() =>
sequenceGroupElements.value.length
@@ -220,7 +223,7 @@ const lastSequenceGroupElement = computed(() =>
)
/**
- * Last nucleotide DOM `HTMLElement`
+ * Last nucleotide DOM `HTMLElement`.
*/
const lastNucleotideElement = computed(
() =>
@@ -231,19 +234,19 @@ const lastNucleotideElement = computed(
)
/**
- * Bounding box of last nucleotide DOM `HTMLElement`
+ * Bounding box of last nucleotide DOM `HTMLElement`.
*/
const lastNucleotideElementBounding = useElementBounding(lastNucleotideElement)
/**
- * Bounding box of sequence & the directions labels container DOM `HTMLElement`
+ * Bounding box of sequence & the directions labels container DOM `HTMLElement`.
*/
const sequenceAndLabelsContainerElementBounding = useElementBounding(
sequenceAndLabelsContainerElement
)
/**
- * Inline style of the `3'` label
+ * Inline style of the `3'` label.
*/
const threePrimeLabelStyle = computed(() => ({
left: `calc(${
@@ -258,31 +261,7 @@ const threePrimeLabelStyle = computed(() => ({
}))
/**
- * Updates the list of the first nucleotide of each box DOM `HTMLElement`
- */
-const updateBoxFirstNucleotideElements = (): HTMLElement[] =>
- (boxFirstNucleotideElements.value = Array.from(
- document.querySelectorAll('[data-is-highlight-start="true"]')
- ) as HTMLElement[])
-
-/**
- * Updates the list of the last nucleotide of each box DOM `HTMLElement`
- */
-const updateBoxLastNucleotideElements = (): HTMLElement[] =>
- (boxLastNucleotideElements.value = Array.from(
- document.querySelectorAll('[data-is-highlight-end="true"]')
- ) as HTMLElement[])
-
-/**
- * Updates all DOM `HTMLElement`
- */
-const updateElements = (): void => {
- updateBoxFirstNucleotideElements()
- updateBoxLastNucleotideElements()
-}
-
-/**
- * Height of a line of sequence, adapted to both Chromium & Firefox
+ * Height of a line of sequence, adapted to both Chromium & Firefox.
*/
const lineHeight = computed(
() =>
@@ -300,38 +279,37 @@ const lineHeight = computed(
/**
* Dictionary of the number of line on which each highlighted group spreads,
- * by group ID
+ * by group ID.
*/
const highlightedGroupsLineCount = ref<{ [groupId: string]: number }>()
/**
- * Updates the number of line on which each highlighted group spreads
- * @returns The updated number of line on which each highlighted group spreads
- * @description Retrieves the line count by getting the difference between the top of the
- * last nucleotide of the box and the top of the first one, and dividing by
- * the line height
+ * Updates the number of line on which each highlighted group spreads.
+ * @returns The updated number of line on which each highlighted group spreads.
+ * @description Retrieves the line count by getting the difference between the
+ * top of the last nucleotide of the box and the top of the first one, and
+ * dividing by the line height.
*/
const updateHighlightedGroupsLineCount =
(): typeof highlightedGroupsLineCount.value =>
(highlightedGroupsLineCount.value =
props.highlightedGroups &&
- Object.keys(props.highlightedGroups).reduce(
- (highlightedGroupsLineCount, groupId) => ({
+ Object.entries(props.highlightedGroups).reduce(
+ (highlightedGroupsLineCount, [groupId, group]) => ({
...highlightedGroupsLineCount,
[groupId]:
lineHeight.value &&
Math.round(
((
- _find(boxLastNucleotideElements.value, [
- 'dataset.highlightIndex',
- groupId
- ])?.offsetParent as HTMLElement
+ boxBoundaryElements.value.find(
+ (element) => element.dataset.position === group.end.toString()
+ )?.offsetParent as HTMLElement
)?.offsetTop -
(
- _find(boxFirstNucleotideElements.value, [
- 'dataset.highlightIndex',
- groupId
- ])?.offsetParent as HTMLElement
+ boxBoundaryElements.value.find(
+ (element) =>
+ element.dataset.position === group.start.toString()
+ )?.offsetParent as HTMLElement
)?.offsetTop) /
lineHeight.value
) + 1
@@ -340,13 +318,13 @@ const updateHighlightedGroupsLineCount =
))
/**
- * Number of lines over which the sequence spreads
+ * Number of lines over which the sequence spreads.
*/
const lineCount = ref<number>()
/**
- * Updates the number of lines over which the sequence spreads
- * @returns The updated line count
+ * Updates the number of lines over which the sequence spreads.
+ * @returns The updated line count.
*/
const updateLineCount = (): typeof lineCount.value =>
(lineCount.value =
@@ -356,13 +334,13 @@ const updateLineCount = (): typeof lineCount.value =>
))
/**
- * Number of columns over which the sequence spreads
+ * Number of columns over which the sequence spreads.
*/
const columnCount = ref<number>()
/**
- * Updates the number of columns over which the sequence spreads
- * @returns The updated column count
+ * Updates the number of columns over which the sequence spreads.
+ * @returns The updated column count.
*/
const updateColumnCount = (): typeof columnCount.value => {
updateLineCount()
@@ -371,12 +349,24 @@ const updateColumnCount = (): typeof columnCount.value => {
}
/**
- * Width of the sequence container
+ * Width of the sequence container.
*/
const sequenceContainerContentWidth = ref<number>()
+useMutationObserver(
+ sequenceContainerElement,
+ (mutations) => {
+ if (mutations[0]) {
+ console.log(mutations[0])
+ }
+ },
+ {
+ childList: true
+ }
+)
+
/**
- * Updates the width of the sequence container
+ * Updates the width of the sequence container.
*/
const updateSequenceContainerContentWidth =
(): typeof sequenceContainerContentWidth.value => {
@@ -398,16 +388,15 @@ const updateSequenceContainerContentWidth =
}
/**
- * Updates all the DOM positions & sizes
+ * Updates all the DOM positions & sizes.
*/
-const updatePositions = (): void => {
- updateElements()
+const update = (): void => {
updateHighlightedGroupsLineCount()
updateSequenceContainerContentWidth()
}
/**
- * Redraws the nucleotide positions of the start of each split sequence groups
+ * Redraws the nucleotide positions of the start of each split sequence groups.
*/
const redrawGroupNumbers = (): void => {
groupsPositionsElements.value.forEach((groupNumberElement) => {
@@ -429,22 +418,16 @@ const redrawGroupNumbers = (): void => {
}
/**
- * Redraws the boxes of highlighted groups
+ * Redraws the boxes of highlighted groups.
*/
const redrawBoxes = (): void => {
boxElements.value.forEach((boxElement) => {
- const matchingBoxFirstNucleotideElement =
- boxFirstNucleotideElements.value.find((element) => {
- return (
- element.dataset.highlightIndex === boxElement.dataset.highlightIndex
- )
- })
- const matchingBoxLastNucleotideElement =
- boxLastNucleotideElements.value.find((element) => {
- return (
- element.dataset.highlightIndex === boxElement.dataset.highlightIndex
- )
- })
+ const matchingBoxFirstNucleotideElement = boxBoundaryElements.value.find(
+ (element) => element.dataset.position === boxElement.dataset.start
+ )
+ const matchingBoxLastNucleotideElement = boxBoundaryElements.value.find(
+ (element) => element.dataset.position === boxElement.dataset.end
+ )
if (
!matchingBoxFirstNucleotideElement?.offsetParent ||
@@ -500,35 +483,35 @@ const redrawBoxes = (): void => {
}
/**
- * Redraws every absolutely positioned objects
+ * Redraws every absolutely positioned objects.
*/
-const redrawObjects = (): void => {
+const redraw = (): void => {
redrawGroupNumbers()
redrawBoxes()
}
/**
- * Updates values then redraws every absolutely positioned objects
+ * Updates values then redraws every absolutely positioned objects.
*/
const updateAndRedraw = (): void => {
- updatePositions()
- redrawObjects()
+ update()
+ redraw()
}
/**
- * Whether the sequence is visible or not
+ * Whether the sequence is visible or not.
*/
const isSequenceContainerElementVisible = useElementVisibility(
sequenceContainerElement
)
/**
- * Sets hook to update and (re)draw on component mount
+ * Sets hook to update and (re)draw on component mount.
*/
onMounted(updateAndRedraw)
/**
- * Sets an observer to update and redraw on container resize
+ * Sets an observer to update and redraw on container resize.
*/
useResizeObserver(sequenceContainerElement, () => {
updateAndRedraw()
@@ -538,7 +521,7 @@ useResizeObserver(sequenceContainerElement, () => {
})
/**
- * Sets an observer to update and redraw when resuming sequence visibility
+ * Sets an observer to update and redraw when resuming sequence visibility.
*/
watch(isSequenceContainerElementVisible, (visibility) => {
if (visibility) {
@@ -610,20 +593,15 @@ watch(isSequenceContainerElementVisible, (visibility) => {
<span
v-for="(nucleotide, nucleotideIndex) in sequenceGroup"
:key="nucleotideIndex"
- :data-is-highlight-start="
- isHighlightedGroupStart(
+ :ref="
+ isHighlightedGroupBoundary(
nucleotideIndex + groupIndex * nucleotideGroupsSize + 1
)
+ ? 'boxBoundaryElements'
+ : ''
"
- :data-is-highlight-end="
- isHighlightedGroupEnd(
- nucleotideIndex + groupIndex * nucleotideGroupsSize + 1
- )
- "
- :data-highlight-index="
- idOfGroupStartingOrEndingWith(
- nucleotideIndex + groupIndex * nucleotideGroupsSize + 1
- )
+ :data-position="
+ nucleotideIndex + groupIndex * nucleotideGroupsSize + 1
"
:class="[
'mx-[.0625rem] border-2 border-transparent px-0.5 pt-0.5',
@@ -655,11 +633,12 @@ watch(isSequenceContainerElementVisible, (visibility) => {
)"
:key="highlightedGroupId"
ref="boxElements"
- :data-highlight-index="highlightedGroupId"
+ :data-start="highlightedGroup.start"
+ :data-end="highlightedGroup.end"
class="highlight-group"
>
<span
- v-for="highlightedGroupLine in _range(
+ v-for="highlightedGroupLine in range(
highlightedGroupsLineCount?.[highlightedGroupId] || 0
)"
:key="highlightedGroupLine"
@@ -669,11 +648,13 @@ watch(isSequenceContainerElementVisible, (visibility) => {
`!border-${highlightedGroup.color}-600`,
`bg-${highlightedGroup.color}-100`
],
- highlightedGroupLine === 0 && 'rounded-l-xl border-l-2',
- (highlightedGroupsLineCount &&
- highlightedGroupLine ===
- highlightedGroupsLineCount[highlightedGroupId]) ||
- (0 - 1 && 'rounded-r-xl border-r-2')
+ {
+ 'rounded-l-xl border-l-2': highlightedGroupLine === 0,
+ 'rounded-r-xl border-r-2':
+ highlightedGroupsLineCount &&
+ highlightedGroupLine + 1 ===
+ highlightedGroupsLineCount[highlightedGroupId]
+ }
]"
></span>
</span>
diff --git a/src/gql/codegen/gql.ts b/src/gql/codegen/gql.ts
index 52351f8a355c3ef5b39c941d0ca909670d060b0f..6334799a58f48d3f289001cf0b01b4f1103fdc98 100644
--- a/src/gql/codegen/gql.ts
+++ b/src/gql/codegen/gql.ts
@@ -15,11 +15,11 @@ import type { TypedDocumentNode as DocumentNode } from '@graphql-typed-document-
const documents = {
"\n query speciesListQuery {\n manySpecies {\n id\n name\n shortname\n }\n }\n": types.SpeciesListQueryDocument,
"\n query tableEntriesQuery {\n tableEntries {\n id\n modification {\n id\n name\n position\n result\n type\n target {\n id\n name\n type\n length\n genome {\n species {\n id\n name\n }\n }\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n }\n }\n }\n }\n }\n guide {\n id\n name\n type\n subtype\n length\n seq\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n length\n }\n }\n }\n }\n }\n }\n": types.TableEntriesQueryDocument,
- "\n query speciesByIdQuery(\n $where: SpeciesWhere\n $modificationsWhere: ModificationWhere\n $targetsWhere: TargetWhere\n $guidesWhere: GuideWhere\n ) {\n manySpecies(where: $where) {\n id\n name\n shortname\n genomes {\n sequences(where: { featureType: Chromosome }) {\n id\n name\n length\n featureType\n featuresConnection(where: { node: { featureType: Guide } }) {\n totalCount\n }\n }\n }\n }\n modifications(where: $modificationsWhere) {\n id\n name\n result\n type\n guidesAggregate {\n count\n }\n }\n targets(where: $targetsWhere) {\n id\n name\n type\n modificationsAggregate {\n count\n }\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n subtype\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n node {\n id\n }\n }\n }\n modificationsAggregate {\n count\n }\n }\n }\n": types.SpeciesByIdQueryDocument,
- "\n query modificationByIdQuery(\n $where: ModificationWhere\n $guidesWhere: GuideWhere\n $interactionsWhere: InteractionWhere\n ) {\n modifications(where: $where) {\n id\n name\n type\n result\n position\n target {\n id\n name\n type\n genome {\n species {\n id\n name\n }\n }\n }\n # chebi_id\n # so_id\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n }\n interactions(where: $interactionsWhere) {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n guide {\n id\n name\n subtype\n type\n }\n target {\n id\n name\n type\n }\n }\n }\n": types.ModificationByIdQueryDocument,
- "\n query guideByIdQuery($where: GuideWhere, $targetsWhere: TargetWhere) {\n guides(where: $where) {\n id\n name\n length\n subtype\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n length\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n target {\n id\n name\n type\n }\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n target {\n id\n name\n type\n }\n }\n cluster {\n id\n }\n clusterAggregate {\n count\n }\n isoform {\n guides {\n id\n name\n }\n guidesAggregate {\n count\n }\n }\n isoformAggregate {\n count\n }\n chebi_id\n so_id\n }\n targets(where: $targetsWhere) {\n id\n name\n type\n }\n }\n": types.GuideByIdQueryDocument,
- "\n query targetByIdQuery($where: TargetWhere, $guidesWhere: GuideWhere) {\n targets(where: $where) {\n id\n name\n length\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n name\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n position\n result\n type\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n guide {\n id\n name\n subtype\n type\n }\n }\n chebi_id\n so_id\n url\n secondary_struct_file\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n }\n }\n": types.TargetByIdQueryDocument,
- "\n query clusterByIdQuery($where: ClusterWhere) {\n clusters(where: $where) {\n id\n guides {\n id\n name\n type\n subtype\n modificationsAggregate {\n count\n }\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n }\n }\n }\n guidesAggregate {\n count\n }\n referenceGuide: guides(options: { limit: 1 }) {\n parent {\n id\n name\n }\n genome {\n species {\n name\n id\n }\n }\n }\n }\n }\n": types.ClusterByIdQueryDocument,
+ "\n query speciesByIdQuery($id: Int) {\n manySpecies(where: { id: $id }) {\n id\n name\n shortname\n genomes {\n sequences(where: { featureType: Chromosome }) {\n id\n name\n length\n featureType\n featuresConnection(where: { node: { featureType: Guide } }) {\n totalCount\n }\n }\n }\n }\n modifications(where: { target: { genome: { species: { id: $id } } } }) {\n id\n name\n result\n type\n guidesAggregate {\n count\n }\n }\n targets(where: { genome: { species: { id: $id } } }) {\n id\n name\n type\n modificationsAggregate {\n count\n }\n }\n guides(where: { genome: { species: { id: $id } } }) {\n id\n name\n type\n subtype\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n node {\n id\n }\n }\n }\n modificationsAggregate {\n count\n }\n }\n }\n": types.SpeciesByIdQueryDocument,
+ "\n query modificationByIdQuery($id: ID) {\n modifications(where: { id: $id }) {\n id\n name\n type\n result\n position\n target {\n id\n name\n type\n genome {\n species {\n id\n name\n }\n }\n }\n # chebi_id\n # so_id\n }\n guides(where: { modifications_SOME: { id: $id } }) {\n id\n name\n type\n }\n interactions(where: { modification: { id: $id } }) {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n guide {\n id\n name\n subtype\n type\n }\n target {\n id\n name\n type\n }\n }\n }\n": types.ModificationByIdQueryDocument,
+ "\n query guideByIdQuery($id: ID) {\n guides(where: { id: $id }) {\n id\n name\n length\n subtype\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n length\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n featuresConnection(where: { NOT: { node: { type: DuplexFragment } } }) {\n edges {\n start\n end\n node {\n id\n type\n }\n }\n }\n modifications {\n id\n name\n target {\n id\n name\n type\n }\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n target {\n id\n name\n type\n }\n }\n cluster {\n id\n }\n clusterAggregate {\n count\n }\n isoform {\n guides {\n id\n name\n }\n guidesAggregate {\n count\n }\n }\n isoformAggregate {\n count\n }\n chebi_id\n so_id\n }\n targets(where: { modifications_SOME: { guides_SOME: { id: $id } } }) {\n id\n name\n type\n }\n }\n": types.GuideByIdQueryDocument,
+ "\n query targetByIdQuery($id: ID) {\n targets(where: { id: $id }) {\n id\n name\n length\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n name\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n position\n result\n type\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n guide {\n id\n name\n subtype\n type\n }\n }\n chebi_id\n so_id\n url\n secondary_struct_file\n }\n guides(where: { modifications_SOME: { target: { id: $id } } }) {\n id\n name\n type\n }\n }\n": types.TargetByIdQueryDocument,
+ "\n query clusterByIdQuery($id: ID) {\n clusters(where: { id: $id }) {\n id\n guides {\n id\n name\n type\n subtype\n modificationsAggregate {\n count\n }\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n }\n }\n }\n guidesAggregate {\n count\n }\n referenceGuide: guides(options: { limit: 1 }) {\n parent {\n id\n name\n }\n genome {\n species {\n name\n id\n }\n }\n }\n }\n }\n": types.ClusterByIdQueryDocument,
};
/**
@@ -47,23 +47,23 @@ export function graphql(source: "\n query tableEntriesQuery {\n tableEntries
/**
* The graphql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
-export function graphql(source: "\n query speciesByIdQuery(\n $where: SpeciesWhere\n $modificationsWhere: ModificationWhere\n $targetsWhere: TargetWhere\n $guidesWhere: GuideWhere\n ) {\n manySpecies(where: $where) {\n id\n name\n shortname\n genomes {\n sequences(where: { featureType: Chromosome }) {\n id\n name\n length\n featureType\n featuresConnection(where: { node: { featureType: Guide } }) {\n totalCount\n }\n }\n }\n }\n modifications(where: $modificationsWhere) {\n id\n name\n result\n type\n guidesAggregate {\n count\n }\n }\n targets(where: $targetsWhere) {\n id\n name\n type\n modificationsAggregate {\n count\n }\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n subtype\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n node {\n id\n }\n }\n }\n modificationsAggregate {\n count\n }\n }\n }\n"): (typeof documents)["\n query speciesByIdQuery(\n $where: SpeciesWhere\n $modificationsWhere: ModificationWhere\n $targetsWhere: TargetWhere\n $guidesWhere: GuideWhere\n ) {\n manySpecies(where: $where) {\n id\n name\n shortname\n genomes {\n sequences(where: { featureType: Chromosome }) {\n id\n name\n length\n featureType\n featuresConnection(where: { node: { featureType: Guide } }) {\n totalCount\n }\n }\n }\n }\n modifications(where: $modificationsWhere) {\n id\n name\n result\n type\n guidesAggregate {\n count\n }\n }\n targets(where: $targetsWhere) {\n id\n name\n type\n modificationsAggregate {\n count\n }\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n subtype\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n node {\n id\n }\n }\n }\n modificationsAggregate {\n count\n }\n }\n }\n"];
+export function graphql(source: "\n query speciesByIdQuery($id: Int) {\n manySpecies(where: { id: $id }) {\n id\n name\n shortname\n genomes {\n sequences(where: { featureType: Chromosome }) {\n id\n name\n length\n featureType\n featuresConnection(where: { node: { featureType: Guide } }) {\n totalCount\n }\n }\n }\n }\n modifications(where: { target: { genome: { species: { id: $id } } } }) {\n id\n name\n result\n type\n guidesAggregate {\n count\n }\n }\n targets(where: { genome: { species: { id: $id } } }) {\n id\n name\n type\n modificationsAggregate {\n count\n }\n }\n guides(where: { genome: { species: { id: $id } } }) {\n id\n name\n type\n subtype\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n node {\n id\n }\n }\n }\n modificationsAggregate {\n count\n }\n }\n }\n"): (typeof documents)["\n query speciesByIdQuery($id: Int) {\n manySpecies(where: { id: $id }) {\n id\n name\n shortname\n genomes {\n sequences(where: { featureType: Chromosome }) {\n id\n name\n length\n featureType\n featuresConnection(where: { node: { featureType: Guide } }) {\n totalCount\n }\n }\n }\n }\n modifications(where: { target: { genome: { species: { id: $id } } } }) {\n id\n name\n result\n type\n guidesAggregate {\n count\n }\n }\n targets(where: { genome: { species: { id: $id } } }) {\n id\n name\n type\n modificationsAggregate {\n count\n }\n }\n guides(where: { genome: { species: { id: $id } } }) {\n id\n name\n type\n subtype\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n node {\n id\n }\n }\n }\n modificationsAggregate {\n count\n }\n }\n }\n"];
/**
* The graphql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
-export function graphql(source: "\n query modificationByIdQuery(\n $where: ModificationWhere\n $guidesWhere: GuideWhere\n $interactionsWhere: InteractionWhere\n ) {\n modifications(where: $where) {\n id\n name\n type\n result\n position\n target {\n id\n name\n type\n genome {\n species {\n id\n name\n }\n }\n }\n # chebi_id\n # so_id\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n }\n interactions(where: $interactionsWhere) {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n guide {\n id\n name\n subtype\n type\n }\n target {\n id\n name\n type\n }\n }\n }\n"): (typeof documents)["\n query modificationByIdQuery(\n $where: ModificationWhere\n $guidesWhere: GuideWhere\n $interactionsWhere: InteractionWhere\n ) {\n modifications(where: $where) {\n id\n name\n type\n result\n position\n target {\n id\n name\n type\n genome {\n species {\n id\n name\n }\n }\n }\n # chebi_id\n # so_id\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n }\n interactions(where: $interactionsWhere) {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n guide {\n id\n name\n subtype\n type\n }\n target {\n id\n name\n type\n }\n }\n }\n"];
+export function graphql(source: "\n query modificationByIdQuery($id: ID) {\n modifications(where: { id: $id }) {\n id\n name\n type\n result\n position\n target {\n id\n name\n type\n genome {\n species {\n id\n name\n }\n }\n }\n # chebi_id\n # so_id\n }\n guides(where: { modifications_SOME: { id: $id } }) {\n id\n name\n type\n }\n interactions(where: { modification: { id: $id } }) {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n guide {\n id\n name\n subtype\n type\n }\n target {\n id\n name\n type\n }\n }\n }\n"): (typeof documents)["\n query modificationByIdQuery($id: ID) {\n modifications(where: { id: $id }) {\n id\n name\n type\n result\n position\n target {\n id\n name\n type\n genome {\n species {\n id\n name\n }\n }\n }\n # chebi_id\n # so_id\n }\n guides(where: { modifications_SOME: { id: $id } }) {\n id\n name\n type\n }\n interactions(where: { modification: { id: $id } }) {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n guide {\n id\n name\n subtype\n type\n }\n target {\n id\n name\n type\n }\n }\n }\n"];
/**
* The graphql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
-export function graphql(source: "\n query guideByIdQuery($where: GuideWhere, $targetsWhere: TargetWhere) {\n guides(where: $where) {\n id\n name\n length\n subtype\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n length\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n target {\n id\n name\n type\n }\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n target {\n id\n name\n type\n }\n }\n cluster {\n id\n }\n clusterAggregate {\n count\n }\n isoform {\n guides {\n id\n name\n }\n guidesAggregate {\n count\n }\n }\n isoformAggregate {\n count\n }\n chebi_id\n so_id\n }\n targets(where: $targetsWhere) {\n id\n name\n type\n }\n }\n"): (typeof documents)["\n query guideByIdQuery($where: GuideWhere, $targetsWhere: TargetWhere) {\n guides(where: $where) {\n id\n name\n length\n subtype\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n length\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n target {\n id\n name\n type\n }\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n target {\n id\n name\n type\n }\n }\n cluster {\n id\n }\n clusterAggregate {\n count\n }\n isoform {\n guides {\n id\n name\n }\n guidesAggregate {\n count\n }\n }\n isoformAggregate {\n count\n }\n chebi_id\n so_id\n }\n targets(where: $targetsWhere) {\n id\n name\n type\n }\n }\n"];
+export function graphql(source: "\n query guideByIdQuery($id: ID) {\n guides(where: { id: $id }) {\n id\n name\n length\n subtype\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n length\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n featuresConnection(where: { NOT: { node: { type: DuplexFragment } } }) {\n edges {\n start\n end\n node {\n id\n type\n }\n }\n }\n modifications {\n id\n name\n target {\n id\n name\n type\n }\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n target {\n id\n name\n type\n }\n }\n cluster {\n id\n }\n clusterAggregate {\n count\n }\n isoform {\n guides {\n id\n name\n }\n guidesAggregate {\n count\n }\n }\n isoformAggregate {\n count\n }\n chebi_id\n so_id\n }\n targets(where: { modifications_SOME: { guides_SOME: { id: $id } } }) {\n id\n name\n type\n }\n }\n"): (typeof documents)["\n query guideByIdQuery($id: ID) {\n guides(where: { id: $id }) {\n id\n name\n length\n subtype\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n id\n name\n length\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n featuresConnection(where: { NOT: { node: { type: DuplexFragment } } }) {\n edges {\n start\n end\n node {\n id\n type\n }\n }\n }\n modifications {\n id\n name\n target {\n id\n name\n type\n }\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n target {\n id\n name\n type\n }\n }\n cluster {\n id\n }\n clusterAggregate {\n count\n }\n isoform {\n guides {\n id\n name\n }\n guidesAggregate {\n count\n }\n }\n isoformAggregate {\n count\n }\n chebi_id\n so_id\n }\n targets(where: { modifications_SOME: { guides_SOME: { id: $id } } }) {\n id\n name\n type\n }\n }\n"];
/**
* The graphql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
-export function graphql(source: "\n query targetByIdQuery($where: TargetWhere, $guidesWhere: GuideWhere) {\n targets(where: $where) {\n id\n name\n length\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n name\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n position\n result\n type\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n guide {\n id\n name\n subtype\n type\n }\n }\n chebi_id\n so_id\n url\n secondary_struct_file\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n }\n }\n"): (typeof documents)["\n query targetByIdQuery($where: TargetWhere, $guidesWhere: GuideWhere) {\n targets(where: $where) {\n id\n name\n length\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n name\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n position\n result\n type\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n guide {\n id\n name\n subtype\n type\n }\n }\n chebi_id\n so_id\n url\n secondary_struct_file\n }\n guides(where: $guidesWhere) {\n id\n name\n type\n }\n }\n"];
+export function graphql(source: "\n query targetByIdQuery($id: ID) {\n targets(where: { id: $id }) {\n id\n name\n length\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n name\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n position\n result\n type\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n guide {\n id\n name\n subtype\n type\n }\n }\n chebi_id\n so_id\n url\n secondary_struct_file\n }\n guides(where: { modifications_SOME: { target: { id: $id } } }) {\n id\n name\n type\n }\n }\n"): (typeof documents)["\n query targetByIdQuery($id: ID) {\n targets(where: { id: $id }) {\n id\n name\n length\n type\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n strand\n node {\n name\n featureType\n }\n }\n }\n seq\n genome {\n species {\n id\n name\n }\n }\n modifications {\n id\n name\n position\n result\n type\n }\n modificationsAggregate {\n count\n }\n interactions {\n duplexes {\n primaryStrandsConnection: strandsConnection(\n where: { edge: { primary: true } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n secondaryStrandsConnection: strandsConnection(\n where: { edge: { primary: false } }\n ) {\n edges {\n start\n end\n primary\n node {\n seq\n parentConnection {\n edges {\n start\n end\n }\n }\n }\n }\n }\n index\n }\n modification {\n id\n name\n position\n result\n type\n }\n guide {\n id\n name\n subtype\n type\n }\n }\n chebi_id\n so_id\n url\n secondary_struct_file\n }\n guides(where: { modifications_SOME: { target: { id: $id } } }) {\n id\n name\n type\n }\n }\n"];
/**
* The graphql function is used to parse GraphQL queries into a document that can be used by GraphQL clients.
*/
-export function graphql(source: "\n query clusterByIdQuery($where: ClusterWhere) {\n clusters(where: $where) {\n id\n guides {\n id\n name\n type\n subtype\n modificationsAggregate {\n count\n }\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n }\n }\n }\n guidesAggregate {\n count\n }\n referenceGuide: guides(options: { limit: 1 }) {\n parent {\n id\n name\n }\n genome {\n species {\n name\n id\n }\n }\n }\n }\n }\n"): (typeof documents)["\n query clusterByIdQuery($where: ClusterWhere) {\n clusters(where: $where) {\n id\n guides {\n id\n name\n type\n subtype\n modificationsAggregate {\n count\n }\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n }\n }\n }\n guidesAggregate {\n count\n }\n referenceGuide: guides(options: { limit: 1 }) {\n parent {\n id\n name\n }\n genome {\n species {\n name\n id\n }\n }\n }\n }\n }\n"];
+export function graphql(source: "\n query clusterByIdQuery($id: ID) {\n clusters(where: { id: $id }) {\n id\n guides {\n id\n name\n type\n subtype\n modificationsAggregate {\n count\n }\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n }\n }\n }\n guidesAggregate {\n count\n }\n referenceGuide: guides(options: { limit: 1 }) {\n parent {\n id\n name\n }\n genome {\n species {\n name\n id\n }\n }\n }\n }\n }\n"): (typeof documents)["\n query clusterByIdQuery($id: ID) {\n clusters(where: { id: $id }) {\n id\n guides {\n id\n name\n type\n subtype\n modificationsAggregate {\n count\n }\n parentConnection(where: { node: { featureType: Chromosome } }) {\n edges {\n start\n end\n }\n }\n }\n guidesAggregate {\n count\n }\n referenceGuide: guides(options: { limit: 1 }) {\n parent {\n id\n name\n }\n genome {\n species {\n name\n id\n }\n }\n }\n }\n }\n"];
export function graphql(source: string) {
return (documents as any)[source] ?? {};
diff --git a/src/gql/codegen/graphql.ts b/src/gql/codegen/graphql.ts
index f8d94779458ef79437850d18b9d0bd8838247caf..5a115848f6e32bd61893c96b62d85ea051fad3ee 100644
--- a/src/gql/codegen/graphql.ts
+++ b/src/gql/codegen/graphql.ts
@@ -6094,42 +6094,35 @@ export type TableEntriesQueryQueryVariables = Exact<{ [key: string]: never; }>;
export type TableEntriesQueryQuery = { __typename?: 'Query', tableEntries: Array<{ __typename?: 'TableEntry', id: string, modification?: { __typename?: 'Modification', id: string, name: string, position: number, result: string, type?: ModifType | null, target: { __typename?: 'Target', id: string, name?: string | null, type: SequenceType, length: number, genome?: { __typename?: 'Genome', species?: { __typename?: 'Species', id: number, name: string } | null } | null, parentConnection: { __typename?: 'TargetParentConnection', edges: Array<{ __typename?: 'TargetParentRelationship', start: number, end: number, strand?: Strand | null, node: { __typename?: 'Chromosome', id: string, name?: string | null } | { __typename?: 'FeatureSequence', id: string, name?: string | null } | { __typename?: 'Guide', id: string, name?: string | null } | { __typename?: 'Target', id: string, name?: string | null } }> } } } | null, guide?: { __typename?: 'Guide', id: string, name?: string | null, type: SequenceType, subtype: GuideType, length: number, seq?: string | null, parentConnection: { __typename?: 'GuideParentConnection', edges: Array<{ __typename?: 'GuideParentRelationship', start: number, end: number, strand?: Strand | null, node: { __typename?: 'Chromosome', id: string, name?: string | null, length: number } | { __typename?: 'FeatureSequence', id: string, name?: string | null, length: number } | { __typename?: 'Guide', id: string, name?: string | null, length: number } | { __typename?: 'Target', id: string, name?: string | null, length: number } }> } } | null }> };
export type SpeciesByIdQueryQueryVariables = Exact<{
- where?: InputMaybe<SpeciesWhere>;
- modificationsWhere?: InputMaybe<ModificationWhere>;
- targetsWhere?: InputMaybe<TargetWhere>;
- guidesWhere?: InputMaybe<GuideWhere>;
+ id?: InputMaybe<Scalars['Int']['input']>;
}>;
export type SpeciesByIdQueryQuery = { __typename?: 'Query', manySpecies: Array<{ __typename?: 'Species', id: number, name: string, shortname: string, genomes: Array<{ __typename?: 'Genome', sequences: Array<{ __typename?: 'Chromosome', id: string, name?: string | null, length: number, featureType: FeatureType, featuresConnection: { __typename?: 'SequenceFeaturesConnection', totalCount: number } } | { __typename?: 'FeatureSequence', id: string, name?: string | null, length: number, featureType: FeatureType, featuresConnection: { __typename?: 'SequenceFeaturesConnection', totalCount: number } } | { __typename?: 'Guide', id: string, name?: string | null, length: number, featureType: FeatureType, featuresConnection: { __typename?: 'SequenceFeaturesConnection', totalCount: number } } | { __typename?: 'Target', id: string, name?: string | null, length: number, featureType: FeatureType, featuresConnection: { __typename?: 'SequenceFeaturesConnection', totalCount: number } }> }> }>, modifications: Array<{ __typename?: 'Modification', id: string, name: string, result: string, type?: ModifType | null, guidesAggregate?: { __typename?: 'ModificationGuideGuidesAggregationSelection', count: number } | null }>, targets: Array<{ __typename?: 'Target', id: string, name?: string | null, type: SequenceType, modificationsAggregate?: { __typename?: 'TargetModificationModificationsAggregationSelection', count: number } | null }>, guides: Array<{ __typename?: 'Guide', id: string, name?: string | null, type: SequenceType, subtype: GuideType, parentConnection: { __typename?: 'GuideParentConnection', edges: Array<{ __typename?: 'GuideParentRelationship', start: number, end: number, node: { __typename?: 'Chromosome', id: string } | { __typename?: 'FeatureSequence', id: string } | { __typename?: 'Guide', id: string } | { __typename?: 'Target', id: string } }> }, modificationsAggregate?: { __typename?: 'GuideModificationModificationsAggregationSelection', count: number } | null }> };
export type ModificationByIdQueryQueryVariables = Exact<{
- where?: InputMaybe<ModificationWhere>;
- guidesWhere?: InputMaybe<GuideWhere>;
- interactionsWhere?: InputMaybe<InteractionWhere>;
+ id?: InputMaybe<Scalars['ID']['input']>;
}>;
export type ModificationByIdQueryQuery = { __typename?: 'Query', modifications: Array<{ __typename?: 'Modification', id: string, name: string, type?: ModifType | null, result: string, position: number, target: { __typename?: 'Target', id: string, name?: string | null, type: SequenceType, genome?: { __typename?: 'Genome', species?: { __typename?: 'Species', id: number, name: string } | null } | null } }>, guides: Array<{ __typename?: 'Guide', id: string, name?: string | null, type: SequenceType }>, interactions: Array<{ __typename?: 'Interaction', duplexes: Array<{ __typename?: 'Duplex', index: number, primaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> }, secondaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> } }>, guide: { __typename?: 'Guide', id: string, name?: string | null, subtype: GuideType, type: SequenceType }, target: { __typename?: 'Target', id: string, name?: string | null, type: SequenceType } }> };
export type GuideByIdQueryQueryVariables = Exact<{
- where?: InputMaybe<GuideWhere>;
- targetsWhere?: InputMaybe<TargetWhere>;
+ id?: InputMaybe<Scalars['ID']['input']>;
}>;
-export type GuideByIdQueryQuery = { __typename?: 'Query', guides: Array<{ __typename?: 'Guide', id: string, name?: string | null, length: number, subtype: GuideType, type: SequenceType, seq?: string | null, chebi_id?: string | null, so_id?: string | null, parentConnection: { __typename?: 'GuideParentConnection', edges: Array<{ __typename?: 'GuideParentRelationship', start: number, end: number, strand?: Strand | null, node: { __typename?: 'Chromosome', id: string, name?: string | null, length: number, featureType: FeatureType } | { __typename?: 'FeatureSequence', id: string, name?: string | null, length: number, featureType: FeatureType } | { __typename?: 'Guide', id: string, name?: string | null, length: number, featureType: FeatureType } | { __typename?: 'Target', id: string, name?: string | null, length: number, featureType: FeatureType } }> }, genome?: { __typename?: 'Genome', species?: { __typename?: 'Species', id: number, name: string } | null } | null, modifications: Array<{ __typename?: 'Modification', id: string, name: string, target: { __typename?: 'Target', id: string, name?: string | null, type: SequenceType } }>, modificationsAggregate?: { __typename?: 'GuideModificationModificationsAggregationSelection', count: number } | null, interactions: Array<{ __typename?: 'Interaction', duplexes: Array<{ __typename?: 'Duplex', index: number, primaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> }, secondaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> } }>, modification: { __typename?: 'Modification', id: string, name: string, position: number, result: string, type?: ModifType | null }, target: { __typename?: 'Target', id: string, name?: string | null, type: SequenceType } }>, cluster?: { __typename?: 'Cluster', id: string } | null, clusterAggregate?: { __typename?: 'GuideClusterClusterAggregationSelection', count: number } | null, isoform?: { __typename?: 'Isoform', guides: Array<{ __typename?: 'Guide', id: string, name?: string | null }>, guidesAggregate?: { __typename?: 'IsoformGuideGuidesAggregationSelection', count: number } | null } | null, isoformAggregate?: { __typename?: 'GuideIsoformIsoformAggregationSelection', count: number } | null }>, targets: Array<{ __typename?: 'Target', id: string, name?: string | null, type: SequenceType }> };
+export type GuideByIdQueryQuery = { __typename?: 'Query', guides: Array<{ __typename?: 'Guide', id: string, name?: string | null, length: number, subtype: GuideType, type: SequenceType, seq?: string | null, chebi_id?: string | null, so_id?: string | null, parentConnection: { __typename?: 'GuideParentConnection', edges: Array<{ __typename?: 'GuideParentRelationship', start: number, end: number, strand?: Strand | null, node: { __typename?: 'Chromosome', id: string, name?: string | null, length: number, featureType: FeatureType } | { __typename?: 'FeatureSequence', id: string, name?: string | null, length: number, featureType: FeatureType } | { __typename?: 'Guide', id: string, name?: string | null, length: number, featureType: FeatureType } | { __typename?: 'Target', id: string, name?: string | null, length: number, featureType: FeatureType } }> }, genome?: { __typename?: 'Genome', species?: { __typename?: 'Species', id: number, name: string } | null } | null, featuresConnection: { __typename?: 'SequenceFeaturesConnection', edges: Array<{ __typename?: 'SequenceFeaturesRelationship', start: number, end: number, node: { __typename?: 'Chromosome', id: string, type: SequenceType } | { __typename?: 'FeatureSequence', id: string, type: SequenceType } | { __typename?: 'Guide', id: string, type: SequenceType } | { __typename?: 'Target', id: string, type: SequenceType } }> }, modifications: Array<{ __typename?: 'Modification', id: string, name: string, target: { __typename?: 'Target', id: string, name?: string | null, type: SequenceType } }>, modificationsAggregate?: { __typename?: 'GuideModificationModificationsAggregationSelection', count: number } | null, interactions: Array<{ __typename?: 'Interaction', duplexes: Array<{ __typename?: 'Duplex', index: number, primaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> }, secondaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> } }>, modification: { __typename?: 'Modification', id: string, name: string, position: number, result: string, type?: ModifType | null }, target: { __typename?: 'Target', id: string, name?: string | null, type: SequenceType } }>, cluster?: { __typename?: 'Cluster', id: string } | null, clusterAggregate?: { __typename?: 'GuideClusterClusterAggregationSelection', count: number } | null, isoform?: { __typename?: 'Isoform', guides: Array<{ __typename?: 'Guide', id: string, name?: string | null }>, guidesAggregate?: { __typename?: 'IsoformGuideGuidesAggregationSelection', count: number } | null } | null, isoformAggregate?: { __typename?: 'GuideIsoformIsoformAggregationSelection', count: number } | null }>, targets: Array<{ __typename?: 'Target', id: string, name?: string | null, type: SequenceType }> };
export type TargetByIdQueryQueryVariables = Exact<{
- where?: InputMaybe<TargetWhere>;
- guidesWhere?: InputMaybe<GuideWhere>;
+ id?: InputMaybe<Scalars['ID']['input']>;
}>;
export type TargetByIdQueryQuery = { __typename?: 'Query', targets: Array<{ __typename?: 'Target', id: string, name?: string | null, length: number, type: SequenceType, seq?: string | null, chebi_id?: string | null, so_id?: string | null, url?: string | null, secondary_struct_file?: string | null, parentConnection: { __typename?: 'TargetParentConnection', edges: Array<{ __typename?: 'TargetParentRelationship', start: number, end: number, strand?: Strand | null, node: { __typename?: 'Chromosome', name?: string | null, featureType: FeatureType } | { __typename?: 'FeatureSequence', name?: string | null, featureType: FeatureType } | { __typename?: 'Guide', name?: string | null, featureType: FeatureType } | { __typename?: 'Target', name?: string | null, featureType: FeatureType } }> }, genome?: { __typename?: 'Genome', species?: { __typename?: 'Species', id: number, name: string } | null } | null, modifications: Array<{ __typename?: 'Modification', id: string, name: string, position: number, result: string, type?: ModifType | null }>, modificationsAggregate?: { __typename?: 'TargetModificationModificationsAggregationSelection', count: number } | null, interactions: Array<{ __typename?: 'Interaction', duplexes: Array<{ __typename?: 'Duplex', index: number, primaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> }, secondaryStrandsConnection: { __typename?: 'DuplexStrandsConnection', edges: Array<{ __typename?: 'DuplexStrandsRelationship', start: number, end: number, primary?: boolean | null, node: { __typename?: 'FeatureSequence', seq?: string | null, parentConnection: { __typename?: 'FeatureSequenceParentConnection', edges: Array<{ __typename?: 'FeatureSequenceParentRelationship', start: number, end: number }> } } }> } }>, modification: { __typename?: 'Modification', id: string, name: string, position: number, result: string, type?: ModifType | null }, guide: { __typename?: 'Guide', id: string, name?: string | null, subtype: GuideType, type: SequenceType } }> }>, guides: Array<{ __typename?: 'Guide', id: string, name?: string | null, type: SequenceType }> };
export type ClusterByIdQueryQueryVariables = Exact<{
- where?: InputMaybe<ClusterWhere>;
+ id?: InputMaybe<Scalars['ID']['input']>;
}>;
@@ -6138,8 +6131,8 @@ export type ClusterByIdQueryQuery = { __typename?: 'Query', clusters: Array<{ __
export const SpeciesListQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"speciesListQuery"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"manySpecies"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"shortname"}}]}}]}}]} as unknown as DocumentNode<SpeciesListQueryQuery, SpeciesListQueryQueryVariables>;
export const TableEntriesQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"tableEntriesQuery"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"tableEntries"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"modification"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"strand"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"guide"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"strand"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}}]}}]}}]}}]}}]}}]}}]} as unknown as DocumentNode<TableEntriesQueryQuery, TableEntriesQueryQueryVariables>;
-export const SpeciesByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"speciesByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"where"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"SpeciesWhere"}}},{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"modificationsWhere"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"ModificationWhere"}}},{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"targetsWhere"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"TargetWhere"}}},{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"guidesWhere"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"GuideWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"manySpecies"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"where"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"shortname"}},{"kind":"Field","name":{"kind":"Name","value":"genomes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"sequences"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"featureType"}},{"kind":"Field","name":{"kind":"Name","value":"featuresConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Guide"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"totalCount"}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modifications"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"modificationsWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"guidesAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"targets"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"targetsWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"guidesWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}}]}}]} as unknown as DocumentNode<SpeciesByIdQueryQuery, SpeciesByIdQueryQueryVariables>;
-export const ModificationByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"modificationByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"where"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"ModificationWhere"}}},{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"guidesWhere"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"GuideWhere"}}},{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"interactionsWhere"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"InteractionWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"modifications"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"where"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"guidesWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"interactions"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"interactionsWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"duplexes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","alias":{"kind":"Name","value":"primaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":true}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","alias":{"kind":"Name","value":"secondaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":false}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"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as unknown as DocumentNode<ModificationByIdQueryQuery, ModificationByIdQueryQueryVariables>;
-export const GuideByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"guideByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"where"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"GuideWhere"}}},{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"targetsWhere"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"TargetWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"where"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"strand"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"featureType"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modifications"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"interactions"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"duplexes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","alias":{"kind":"Name","value":"primaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":true}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","alias":{"kind":"Name","value":"secondaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":false}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"index"}}]}},{"kind":"Field","name":{"kind":"Name","value":"modification"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"cluster"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}}]}},{"kind":"Field","name":{"kind":"Name","value":"clusterAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"isoform"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"guides"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}},{"kind":"Field","name":{"kind":"Name","value":"guidesAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"isoformAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"chebi_id"}},{"kind":"Field","name":{"kind":"Name","value":"so_id"}}]}},{"kind":"Field","name":{"kind":"Name","value":"targets"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"targetsWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}}]} as unknown as DocumentNode<GuideByIdQueryQuery, GuideByIdQueryQueryVariables>;
-export const TargetByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"targetByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"where"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"TargetWhere"}}},{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"guidesWhere"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"GuideWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"targets"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"where"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"strand"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"featureType"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modifications"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"interactions"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"duplexes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","alias":{"kind":"Name","value":"primaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":true}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","alias":{"kind":"Name","value":"secondaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":false}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"index"}}]}},{"kind":"Field","name":{"kind":"Name","value":"modification"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"guide"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"chebi_id"}},{"kind":"Field","name":{"kind":"Name","value":"so_id"}},{"kind":"Field","name":{"kind":"Name","value":"url"}},{"kind":"Field","name":{"kind":"Name","value":"secondary_struct_file"}}]}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"guidesWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}}]} as unknown as DocumentNode<TargetByIdQueryQuery, TargetByIdQueryQueryVariables>;
-export const ClusterByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"clusterByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"where"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"ClusterWhere"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"clusters"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"Variable","name":{"kind":"Name","value":"where"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"guidesAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","alias":{"kind":"Name","value":"referenceGuide"},"name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"options"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"limit"},"value":{"kind":"IntValue","value":"1"}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"parent"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"id"}}]}}]}}]}}]}}]}}]} as unknown as DocumentNode<ClusterByIdQueryQuery, ClusterByIdQueryQueryVariables>;
\ No newline at end of file
+export const SpeciesByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"speciesByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"id"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"Int"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"manySpecies"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"shortname"}},{"kind":"Field","name":{"kind":"Name","value":"genomes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"sequences"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"featureType"}},{"kind":"Field","name":{"kind":"Name","value":"featuresConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Guide"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"totalCount"}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modifications"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"target"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"genome"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"species"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}]}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"guidesAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"targets"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"genome"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"species"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"genome"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"species"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}}]}}]} as unknown as DocumentNode<SpeciesByIdQueryQuery, SpeciesByIdQueryQueryVariables>;
+export const ModificationByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"modificationByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"id"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"ID"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"modifications"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"modifications_SOME"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"interactions"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"modification"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"duplexes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","alias":{"kind":"Name","value":"primaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":true}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","alias":{"kind":"Name","value":"secondaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":false}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"index"}}]}},{"kind":"Field","name":{"kind":"Name","value":"guide"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}}]}}]} as unknown as DocumentNode<ModificationByIdQueryQuery, ModificationByIdQueryQueryVariables>;
+export const GuideByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"guideByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"id"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"ID"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"strand"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"featureType"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"featuresConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"NOT"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"type"},"value":{"kind":"EnumValue","value":"DuplexFragment"}}]}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modifications"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"interactions"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"duplexes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","alias":{"kind":"Name","value":"primaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":true}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","alias":{"kind":"Name","value":"secondaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":false}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"index"}}]}},{"kind":"Field","name":{"kind":"Name","value":"modification"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"target"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"cluster"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}}]}},{"kind":"Field","name":{"kind":"Name","value":"clusterAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"isoform"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"guides"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}},{"kind":"Field","name":{"kind":"Name","value":"guidesAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"isoformAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"chebi_id"}},{"kind":"Field","name":{"kind":"Name","value":"so_id"}}]}},{"kind":"Field","name":{"kind":"Name","value":"targets"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"modifications_SOME"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"guides_SOME"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}}]} as unknown as DocumentNode<GuideByIdQueryQuery, GuideByIdQueryQueryVariables>;
+export const TargetByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"targetByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"id"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"ID"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"targets"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"length"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"strand"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"featureType"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"modifications"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"interactions"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"duplexes"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","alias":{"kind":"Name","value":"primaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":true}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","alias":{"kind":"Name","value":"secondaryStrandsConnection"},"name":{"kind":"Name","value":"strandsConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"edge"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"primary"},"value":{"kind":"BooleanValue","value":false}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}},{"kind":"Field","name":{"kind":"Name","value":"primary"}},{"kind":"Field","name":{"kind":"Name","value":"node"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"seq"}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"index"}}]}},{"kind":"Field","name":{"kind":"Name","value":"modification"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"position"}},{"kind":"Field","name":{"kind":"Name","value":"result"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}},{"kind":"Field","name":{"kind":"Name","value":"guide"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"chebi_id"}},{"kind":"Field","name":{"kind":"Name","value":"so_id"}},{"kind":"Field","name":{"kind":"Name","value":"url"}},{"kind":"Field","name":{"kind":"Name","value":"secondary_struct_file"}}]}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"modifications_SOME"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"target"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}}]}}]}}]} as unknown as DocumentNode<TargetByIdQueryQuery, TargetByIdQueryQueryVariables>;
+export const ClusterByIdQueryDocument = {"kind":"Document","definitions":[{"kind":"OperationDefinition","operation":"query","name":{"kind":"Name","value":"clusterByIdQuery"},"variableDefinitions":[{"kind":"VariableDefinition","variable":{"kind":"Variable","name":{"kind":"Name","value":"id"}},"type":{"kind":"NamedType","name":{"kind":"Name","value":"ID"}}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"clusters"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"id"},"value":{"kind":"Variable","name":{"kind":"Name","value":"id"}}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"guides"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"type"}},{"kind":"Field","name":{"kind":"Name","value":"subtype"}},{"kind":"Field","name":{"kind":"Name","value":"modificationsAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","name":{"kind":"Name","value":"parentConnection"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"where"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"node"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"featureType"},"value":{"kind":"EnumValue","value":"Chromosome"}}]}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"edges"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"start"}},{"kind":"Field","name":{"kind":"Name","value":"end"}}]}}]}}]}},{"kind":"Field","name":{"kind":"Name","value":"guidesAggregate"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"count"}}]}},{"kind":"Field","alias":{"kind":"Name","value":"referenceGuide"},"name":{"kind":"Name","value":"guides"},"arguments":[{"kind":"Argument","name":{"kind":"Name","value":"options"},"value":{"kind":"ObjectValue","fields":[{"kind":"ObjectField","name":{"kind":"Name","value":"limit"},"value":{"kind":"IntValue","value":"1"}}]}}],"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"parent"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"id"}},{"kind":"Field","name":{"kind":"Name","value":"name"}}]}},{"kind":"Field","name":{"kind":"Name","value":"genome"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"species"},"selectionSet":{"kind":"SelectionSet","selections":[{"kind":"Field","name":{"kind":"Name","value":"name"}},{"kind":"Field","name":{"kind":"Name","value":"id"}}]}}]}}]}}]}}]}}]} as unknown as DocumentNode<ClusterByIdQueryQuery, ClusterByIdQueryQueryVariables>;
\ No newline at end of file
diff --git a/src/gql/queries.ts b/src/gql/queries.ts
index c946404656d216215cff7f128f7794570ed65fd0..85e3c31d2386d2db7f7b418d4c421eaf6e24fdb1 100644
--- a/src/gql/queries.ts
+++ b/src/gql/queries.ts
@@ -81,13 +81,8 @@ export const tableEntriesQuery = graphql(/* GraphQL */ `
* Get data about a species by its ID
*/
export const speciesByIdQuery = graphql(/* GraphQL */ `
- query speciesByIdQuery(
- $where: SpeciesWhere
- $modificationsWhere: ModificationWhere
- $targetsWhere: TargetWhere
- $guidesWhere: GuideWhere
- ) {
- manySpecies(where: $where) {
+ query speciesByIdQuery($id: Int) {
+ manySpecies(where: { id: $id }) {
id
name
shortname
@@ -103,7 +98,7 @@ export const speciesByIdQuery = graphql(/* GraphQL */ `
}
}
}
- modifications(where: $modificationsWhere) {
+ modifications(where: { target: { genome: { species: { id: $id } } } }) {
id
name
result
@@ -112,7 +107,7 @@ export const speciesByIdQuery = graphql(/* GraphQL */ `
count
}
}
- targets(where: $targetsWhere) {
+ targets(where: { genome: { species: { id: $id } } }) {
id
name
type
@@ -120,7 +115,7 @@ export const speciesByIdQuery = graphql(/* GraphQL */ `
count
}
}
- guides(where: $guidesWhere) {
+ guides(where: { genome: { species: { id: $id } } }) {
id
name
type
@@ -145,12 +140,8 @@ export const speciesByIdQuery = graphql(/* GraphQL */ `
* Get data about a modification by its ID
*/
export const modificationByIdQuery = graphql(/* GraphQL */ `
- query modificationByIdQuery(
- $where: ModificationWhere
- $guidesWhere: GuideWhere
- $interactionsWhere: InteractionWhere
- ) {
- modifications(where: $where) {
+ query modificationByIdQuery($id: ID) {
+ modifications(where: { id: $id }) {
id
name
type
@@ -170,12 +161,12 @@ export const modificationByIdQuery = graphql(/* GraphQL */ `
# chebi_id
# so_id
}
- guides(where: $guidesWhere) {
+ guides(where: { modifications_SOME: { id: $id } }) {
id
name
type
}
- interactions(where: $interactionsWhere) {
+ interactions(where: { modification: { id: $id } }) {
duplexes {
primaryStrandsConnection: strandsConnection(
where: { edge: { primary: true } }
@@ -234,8 +225,8 @@ export const modificationByIdQuery = graphql(/* GraphQL */ `
* Get data about a guide by its ID
*/
export const guideByIdQuery = graphql(/* GraphQL */ `
- query guideByIdQuery($where: GuideWhere, $targetsWhere: TargetWhere) {
- guides(where: $where) {
+ query guideByIdQuery($id: ID) {
+ guides(where: { id: $id }) {
id
name
length
@@ -261,6 +252,16 @@ export const guideByIdQuery = graphql(/* GraphQL */ `
name
}
}
+ featuresConnection(where: { NOT: { node: { type: DuplexFragment } } }) {
+ edges {
+ start
+ end
+ node {
+ id
+ type
+ }
+ }
+ }
modifications {
id
name
@@ -347,7 +348,7 @@ export const guideByIdQuery = graphql(/* GraphQL */ `
chebi_id
so_id
}
- targets(where: $targetsWhere) {
+ targets(where: { modifications_SOME: { guides_SOME: { id: $id } } }) {
id
name
type
@@ -359,8 +360,8 @@ export const guideByIdQuery = graphql(/* GraphQL */ `
* Get data about a target by its ID
*/
export const targetByIdQuery = graphql(/* GraphQL */ `
- query targetByIdQuery($where: TargetWhere, $guidesWhere: GuideWhere) {
- targets(where: $where) {
+ query targetByIdQuery($id: ID) {
+ targets(where: { id: $id }) {
id
name
length
@@ -452,7 +453,7 @@ export const targetByIdQuery = graphql(/* GraphQL */ `
url
secondary_struct_file
}
- guides(where: $guidesWhere) {
+ guides(where: { modifications_SOME: { target: { id: $id } } }) {
id
name
type
@@ -464,8 +465,8 @@ export const targetByIdQuery = graphql(/* GraphQL */ `
* Get data about a cluster by its ID
*/
export const clusterByIdQuery = graphql(/* GraphQL */ `
- query clusterByIdQuery($where: ClusterWhere) {
- clusters(where: $where) {
+ query clusterByIdQuery($id: ID) {
+ clusters(where: { id: $id }) {
id
guides {
id
diff --git a/src/typings/typeUtils.ts b/src/typings/typeUtils.ts
index 0ee441470e769332edd5bc990484e889c66b391f..3829cb31292e5ce03623a12cd5f4c731654ce811 100644
--- a/src/typings/typeUtils.ts
+++ b/src/typings/typeUtils.ts
@@ -35,3 +35,8 @@ export type DeepDefined<T> = T extends object
export const isDefined = <T>(value: T): value is Exclude<T, undefined> =>
typeof value !== 'undefined'
+
+export const isIn = <T extends object>(
+ value: any,
+ object: T
+): value is keyof T => value in object
diff --git a/src/utils/colors.ts b/src/utils/colors.ts
index f6b36dd4a43857e9f47e43bbb5bc1e84974e3924..2346ae9bc784055156eabbc023b535ba23ac5c3a 100644
--- a/src/utils/colors.ts
+++ b/src/utils/colors.ts
@@ -1,17 +1,45 @@
/**
* Types imports
*/
-import { ModifType } from '@/gql/codegen/graphql'
+import { ModifType, SequenceType } from '@/gql/codegen/graphql'
import type {
TailwindDefaultColorNameModel,
TailwindDefaultColorShadeModel
} from '@/typings/styleTypes'
-import type { RNANucleotideModel } from '@/typings/typeUtils'
+import { isIn, type RNANucleotideModel } from '@/typings/typeUtils'
/**
* Assets imports
*/
import tailwindDefaultColors from 'tailwindcss/colors'
+/**
+ * Constant associating nucleotide letter with corresponding Tailwind color.
+ */
+const NUCLEOTIDE_TAILWIND_COLORS = {
+ A: 'lime',
+ U: 'red',
+ C: 'orange',
+ G: 'yellow'
+} satisfies { [k: string]: TailwindDefaultColorNameModel }
+
+/**
+ * Constant associating modification type with corresponding Tailwind color.
+ */
+const MODIFICATION_TAILWIND_COLORS = {
+ [ModifType.TwoPOMe]: 'sky',
+ [ModifType.Psi]: 'violet',
+ [ModifType.Other]: 'slate'
+} satisfies { [k: string]: TailwindDefaultColorNameModel }
+
+/**
+ * Constant associating box type with corresponding Tailwind color.
+ */
+const BOX_TAILWIND_COLORS = {
+ [SequenceType.CBox]: 'yellow',
+ [SequenceType.DBox]: 'amber',
+ [SequenceType.Other]: 'slate'
+} satisfies { [k: string]: TailwindDefaultColorNameModel }
+
/**
* Gets the color code of a Tailwind color name with a given shade.
* @param colorName The Tailwind color of which to get the color code.
@@ -20,18 +48,19 @@ import tailwindDefaultColors from 'tailwindcss/colors'
* color in the given shade, otherwise, the Tailwind color name without
* modification (i.e. `colorName`).
*/
-export const getColorWithOptionalShade = (
+export function getColorWithOptionalShade(
+ colorName: TailwindDefaultColorNameModel
+): TailwindDefaultColorNameModel
+export function getColorWithOptionalShade(
+ colorName: TailwindDefaultColorNameModel,
+ shade: TailwindDefaultColorShadeModel
+): string
+export function getColorWithOptionalShade(
colorName: TailwindDefaultColorNameModel,
shade?: TailwindDefaultColorShadeModel
-): TailwindDefaultColorNameModel | string =>
- shade ? tailwindDefaultColors[colorName][shade] : colorName
-
-const nucleotideTailwindColors = {
- A: 'lime',
- U: 'red',
- C: 'orange',
- G: 'yellow'
-} satisfies { [k: string]: TailwindDefaultColorNameModel }
+) {
+ return shade ? tailwindDefaultColors[colorName][shade] : colorName
+}
/**
* Gets the color code or Tailwind color name corresponding to a nucleotide.
@@ -40,20 +69,77 @@ const nucleotideTailwindColors = {
* @returns If a shade is asked for, the HEX color code, otherwise,
* the Tailwind color name.
*/
-export const getNucleotideColor = (
+export function getNucleotideColor(
+ nucleotide: RNANucleotideModel
+): TailwindDefaultColorNameModel
+export function getNucleotideColor(
+ nucleotide: RNANucleotideModel,
+ shade: TailwindDefaultColorShadeModel
+): string
+export function getNucleotideColor(
nucleotide: RNANucleotideModel,
shade?: TailwindDefaultColorShadeModel
-): TailwindDefaultColorNameModel | string =>
- getColorWithOptionalShade(nucleotideTailwindColors[nucleotide], shade)
+) {
+ return shade
+ ? getColorWithOptionalShade(NUCLEOTIDE_TAILWIND_COLORS[nucleotide], shade)
+ : getColorWithOptionalShade(NUCLEOTIDE_TAILWIND_COLORS[nucleotide])
+}
-const modificationTailwindColors = {
- [ModifType.TwoPOMe]: 'sky',
- [ModifType.Psi]: 'violet',
- [ModifType.Other]: 'slate'
-} satisfies { [k: string]: TailwindDefaultColorNameModel }
-
-export const getModificationColor = (
+/**
+ * Gets the color code or Tailwind color name corresponding to a type of
+ * modification.
+ * @param modificationType The modification type of which to get the color.
+ * @param shade The shade in which to get the color.
+ * @returns If a shade is asked for, the HEX color code, otherwise,
+ * the Tailwind color name.
+ */
+export function getModificationColor(
+ modificationType: ModifType
+): TailwindDefaultColorNameModel
+export function getModificationColor(
modificationType: ModifType,
+ shade: TailwindDefaultColorShadeModel
+): string
+export function getModificationColor(
+ modificationType: ModifType,
+ shade?: TailwindDefaultColorShadeModel
+) {
+ return shade
+ ? getColorWithOptionalShade(
+ MODIFICATION_TAILWIND_COLORS[modificationType],
+ shade
+ )
+ : getColorWithOptionalShade(MODIFICATION_TAILWIND_COLORS[modificationType])
+}
+
+/**
+ * Gets the color code or Tailwind color name corresponding to a type of box.
+ * @param boxType The box type of which to get the color.
+ * @param shade The shade in which to get the color.
+ * @returns If a shade is asked for, the HEX color code, otherwise,
+ * the Tailwind color name.
+ */
+export function getBoxColor(
+ boxType: SequenceType
+): TailwindDefaultColorNameModel
+export function getBoxColor(
+ boxType: SequenceType,
+ shade: TailwindDefaultColorShadeModel
+): string
+export function getBoxColor(
+ boxType: SequenceType,
shade?: TailwindDefaultColorShadeModel
-): TailwindDefaultColorNameModel | string =>
- getColorWithOptionalShade(modificationTailwindColors[modificationType], shade)
+) {
+ return shade
+ ? getColorWithOptionalShade(
+ BOX_TAILWIND_COLORS[
+ isIn(boxType, BOX_TAILWIND_COLORS) ? boxType : SequenceType.Other
+ ],
+ shade
+ )
+ : getColorWithOptionalShade(
+ BOX_TAILWIND_COLORS[
+ isIn(boxType, BOX_TAILWIND_COLORS) ? boxType : SequenceType.Other
+ ]
+ )
+}
diff --git a/src/utils/numbers.ts b/src/utils/numbers.ts
new file mode 100644
index 0000000000000000000000000000000000000000..d4e130922466b28db504f92641b628b3b6e10120
--- /dev/null
+++ b/src/utils/numbers.ts
@@ -0,0 +1,34 @@
+/**
+ * Creates an array of numbers (positive and/or negative) progressing from start
+ * up to, but not including, end. If provided, a custom step can be used.
+ * @param start The start of the range.
+ * @param end The end of the range.
+ * @param step The value to increment or decrement by.
+ * @returns
+ */
+export function range(start: number, end: number, step?: number): number[]
+/**
+ * Creates an array of numbers (positive and/or negative) progressing from 0
+ * up to, but not including, end.
+ * @param end The end of the range.
+ * @returns
+ */
+export function range(end: number): number[]
+export function range(
+ startOrEnd: number,
+ optionalEnd?: number,
+ optionalStep?: number
+): number[] {
+ const start = optionalEnd ? startOrEnd : 0
+ const end = optionalEnd || startOrEnd
+ const rangeLength = end - start
+ const rangeDirection = rangeLength / Math.abs(rangeLength)
+ const step = optionalStep || rangeDirection
+ if (rangeDirection * step < 0) {
+ return []
+ }
+ return Array.from(
+ { length: Math.floor((end - start) / step) },
+ (_, i) => start + i * step
+ )
+}
diff --git a/src/views/ClusterView.vue b/src/views/ClusterView.vue
index a4c3df60bc48b55308614713b2f499bea7eddbbc..9105aee3b7561501b85de13daaebb6f11d660a0f 100644
--- a/src/views/ClusterView.vue
+++ b/src/views/ClusterView.vue
@@ -49,7 +49,7 @@ const props = defineProps<{
const gqlQuery = useQuery({
query: clusterByIdQuery,
variables: toRef(() => ({
- where: { id: props.clusterId }
+ id: props.clusterId
}))
})
diff --git a/src/views/GuideView.vue b/src/views/GuideView.vue
index 7d65bc94c11ac3ea723e75eb215777f0d0792c57..5287bf469d3b5bfd49fcd7e6140e7d3add89c48b 100644
--- a/src/views/GuideView.vue
+++ b/src/views/GuideView.vue
@@ -47,9 +47,10 @@ import {
} from '@/utils/textFormatting'
import { guideByIdQuery } from '@/gql/queries'
import { isDefined } from '@/typings/typeUtils'
+import { getBoxColor } from '@/utils/colors'
/**
- * Utility constant to get the icon component corresponding to each strand value
+ * Utility constant to get the icon component corresponding to each strand value.
*/
const STRAND_CODE_TO_ICON_COMPONENT = {
[Strand.Negative]: IconFa6SolidCircleMinus,
@@ -59,42 +60,35 @@ const STRAND_CODE_TO_ICON_COMPONENT = {
}
/**
- * Component props
+ * Component props.
*/
const props = defineProps<{
- // The ID of the guide to display
+ /** The ID of the guide to display. */
guideId: string
}>()
/**
- * Reactive urql GraphQL query object, updated with query state & response
+ * Reactive urql GraphQL query object, updated with query state & response.
*/
const gqlQuery = useQuery({
query: guideByIdQuery,
variables: toRef(() => ({
- where: { id: props.guideId },
- targetsWhere: {
- modifications_SOME: {
- guides_SOME: {
- id: props.guideId
- }
- }
- }
+ id: props.guideId
}))
})
/**
- * The guide to display, reactively updated when fetched
+ * The guide to display, reactively updated when fetched.
*/
const guide = computed(() => gqlQuery.data.value?.guides[0])
/**
- * The targets with which the guide is interacting
+ * The targets with which the guide is interacting.
*/
const linkedTargets = computed(() => gqlQuery.data.value?.targets)
/**
- * Title of the page, reactively updated when data is fetched
+ * Title of the page, reactively updated when data is fetched.
*/
const pageTitle = computed(() =>
guide.value ? `${guide.value.name} • Guide | SnoBoard` : 'Guide | SnoBoard'
@@ -102,19 +96,6 @@ const pageTitle = computed(() =>
// Bind actual page title to computed one
useTitle(pageTitle)
-// const convertedInteractionList = computed<InteractionCardModel[] | undefined>(
-// () =>
-// guide.value?.interactions.map((interaction) => ({
-// ...interaction,
-// guide: {
-// id: guide.value?.id,
-// name: guide.value?.name || undefined,
-// seq: guide.value?.seq,
-// subtype: guide.value?.subtype
-// }
-// }))
-// )
-
/**
* The list of the interaction, formatted for display. If some mandatory fields
* for display (mainly sequences) are missing, the corresponding interaction
@@ -181,7 +162,7 @@ const interactionList = computed<InteractionCardModel[] | undefined>(() => {
})
/**
- * Positions of the modifications, on the guide instead of on the target
+ * Positions of the modifications, relative to the guide sequence.
*/
const onGuideModificationPositions = computed(() =>
interactionList.value?.reduce(
@@ -214,10 +195,23 @@ const onGuideModificationPositions = computed(() =>
)
/**
- * Sequence chunks to highlight on the sequence of the guide
+ * Sequence chunks to highlight on the sequence of the guide.
*/
-const sequenceChunks = computed(() =>
- onGuideModificationPositions.value
+const sequenceChunks = computed(() => ({
+ ...guide.value?.featuresConnection.edges.reduce<{
+ [groupId: string]: highlightGroupModel
+ }>(
+ (boxes, featureEdge) => ({
+ ...boxes,
+ [featureEdge.node.id]: {
+ start: Math.max(featureEdge.start, 1),
+ end: Math.min(featureEdge.end, guide.value?.length || featureEdge.end),
+ color: getBoxColor(featureEdge.node.type)
+ }
+ }),
+ {}
+ ),
+ ...(onGuideModificationPositions.value
? Object.entries(onGuideModificationPositions.value).reduce(
(
sequenceChunks: { [groupId: string]: highlightGroupModel },
@@ -232,25 +226,26 @@ const sequenceChunks = computed(() =>
}),
{}
)
- : undefined
-)
+ : undefined)
+}))
/**
- * Guide subtype, formatted for display
+ * Guide subtype, formatted for display.
*/
const formattedGuideSubtype = computed(() =>
formatGuideSubtype(guide.value?.subtype || GuideType.Other)
)
/**
- * Species name, formatted for display
+ * Species name, formatted for display.
*/
const formattedSpeciesName = computed(() =>
formatSpeciesName(guide.value?.genome?.species?.name || '')
)
/**
- * Number of modifications linked to the guide, equals to `'...'` if not fetched yet
+ * Number of modifications linked to the guide,
+ * equals to `'...'` if not fetched yet.
*/
const linkedModificationsCount = computed(() =>
guide.value?.modificationsAggregate == null
@@ -273,7 +268,7 @@ const linkedModificationsFieldName = computed(
)
/**
- * Number of targets linked to the guide, equals to `'...'` if not fetched yet
+ * Number of targets linked to the guide, equals to `'...'` if not fetched yet.
*/
const linkedTargetsCount = computed(() =>
linkedTargets.value === undefined ? '...' : linkedTargets.value.length
@@ -327,7 +322,7 @@ const isoformsFieldName = computed(
/**
* Link between the guide and its parent chromosome, also containing the
- * chromosome object
+ * chromosome object.
*/
const guideParentChromosomeConnection = computed(() =>
guide.value?.parentConnection.edges.find(
@@ -336,14 +331,14 @@ const guideParentChromosomeConnection = computed(() =>
)
/**
- * The guide parent chromosome
+ * The guide parent chromosome.
*/
const guideParentChromosome = computed(
() => guideParentChromosomeConnection.value?.node
)
/**
- * The location of the guide on its parent chromosome
+ * The location of the guide on its parent chromosome.
*/
const guideParentChromosomeLocation = computed(
() =>
@@ -352,7 +347,7 @@ const guideParentChromosomeLocation = computed(
)
/**
- * The various ontology IDs, cleaned from their prefix
+ * The various ontology IDs, cleaned from their prefix.
*/
const ontologyIdsCleaned = computed(() => ({
SO: guide.value?.so_id?.match(/SO_(\d+)/)?.[1],
@@ -360,7 +355,7 @@ const ontologyIdsCleaned = computed(() => ({
}))
/**
- * The various ontology links
+ * The various ontology links.
*/
const ontologyLinks = computed(() => ({
SO: `http://www.sequenceontology.org/browser/current_release/term/SO:${ontologyIdsCleaned.value.SO}`,
@@ -660,14 +655,14 @@ const ontologyLinks = computed(() => ({
selection-field-path2="modification.id"
selection-field-legend2="Modifications"
>
- <template #radioEntryLabel1="{ currentValue }">
+ <template #item-label-1="{ currentValue }">
<strong>{{ currentValue.target.name }}</strong>
<em class="italic text-slate-400">
{{ ` - ${currentValue.target.type}` }}
</em>
</template>
- <template #radioEntryLabel2="{ currentValue }">
+ <template #item-label-2="{ currentValue }">
<strong>{{ currentValue.modification.name }}</strong>
<em class="italic text-slate-400">
{{ ' - ' }}
@@ -676,6 +671,11 @@ const ontologyLinks = computed(() => ({
/>
</em>
</template>
+
+ <template #selection-incomplete-message>
+ Please select a target & modification on the left to visualise the
+ interaction.
+ </template>
</InteractionBoard>
</TabPanel>
</TabView>
diff --git a/src/views/HomeView.vue b/src/views/HomeView.vue
index 746d8cb02bd5a247665ce70b6afc6ff00d0f74fa..75b81a14f4be1be23b29d9d4a5242f0c674383a8 100644
--- a/src/views/HomeView.vue
+++ b/src/views/HomeView.vue
@@ -89,9 +89,9 @@ const selectedSpeciesId = ref<number>()
:values="speciesList"
data-field-path="id"
label-field-path="name"
- @change="(speciesId) => (selectedSpeciesId = speciesId)"
+ @change="(speciesId: number) => (selectedSpeciesId = speciesId)"
>
- <template #entryLabel="{ currentValue }">
+ <template #item-label="{ currentValue }">
<span class="italic">
{{ formatSpeciesName(currentValue.name) }}
</span>
diff --git a/src/views/ModificationView.vue b/src/views/ModificationView.vue
index 851d864da6a49cc3d7b4c86833618b0c81a84dc2..d8e6936ffc4b9f48a3244a1d2b11774ee15301dc 100644
--- a/src/views/ModificationView.vue
+++ b/src/views/ModificationView.vue
@@ -49,17 +49,7 @@ const props = defineProps<{
const gqlQuery = useQuery({
query: modificationByIdQuery,
variables: toRef(() => ({
- where: { id: props.modificationId },
- guidesWhere: {
- modifications_SOME: {
- id: props.modificationId
- }
- },
- interactionsWhere: {
- modification: {
- id: props.modificationId
- }
- }
+ id: props.modificationId
}))
})
@@ -382,12 +372,16 @@ const linkedGuidesFieldName = computed(
selection-field-path1="guide.id"
selection-field-legend1="Guides"
>
- <template #radioEntryLabel1="{ currentValue }">
+ <template #item-label-1="{ currentValue }">
<strong>{{ currentValue.guide.name }}</strong>
<em class="italic text-slate-400">
{{ ` - ${currentValue.guide.type}` }}
</em>
</template>
+
+ <template #selection-incomplete-message>
+ Please select a guide on the left to visualise the interaction.
+ </template>
</InteractionBoard>
</TabPanel>
</TabView>
diff --git a/src/views/StatisticsView.vue b/src/views/StatisticsView.vue
index dcbbe7abccda6c479f9d9c57f59fc2018334bbcb..701976aa2ac6e18b0155d37fee88ff643648fbf6 100644
--- a/src/views/StatisticsView.vue
+++ b/src/views/StatisticsView.vue
@@ -57,30 +57,7 @@ const props = defineProps<{
const gqlQuery = useQuery({
query: speciesByIdQuery,
variables: toRef(() => ({
- where: { id: props.speciesId },
- modificationsWhere: {
- target: {
- genome: {
- species: {
- id: props.speciesId
- }
- }
- }
- },
- targetsWhere: {
- genome: {
- species: {
- id: props.speciesId
- }
- }
- },
- guidesWhere: {
- genome: {
- species: {
- id: props.speciesId
- }
- }
- }
+ id: props.speciesId
}))
})
diff --git a/src/views/TargetView.vue b/src/views/TargetView.vue
index 8fdb0961326f4e9098da4b77f681c3dee6a7d076..a0d5414f730822791462697430f862a7a4293f6f 100644
--- a/src/views/TargetView.vue
+++ b/src/views/TargetView.vue
@@ -70,14 +70,7 @@ const props = defineProps<{
const gqlQuery = useQuery({
query: targetByIdQuery,
variables: toRef(() => ({
- where: { id: props.targetId },
- guidesWhere: {
- modifications_SOME: {
- target: {
- id: props.targetId
- }
- }
- }
+ id: props.targetId
}))
})
@@ -610,7 +603,7 @@ const ontologyLinks = computed(() => ({
selection-field-path2="guide.id"
selection-field-legend2="Guides"
>
- <template #radioEntryLabel1="{ currentValue }">
+ <template #item-label-1="{ currentValue }">
<strong>{{ currentValue.modification.name }}</strong>
<em class="italic text-slate-400">
{{ ' - ' }}
@@ -620,12 +613,17 @@ const ontologyLinks = computed(() => ({
</em>
</template>
- <template #radioEntryLabel2="{ currentValue }">
+ <template #item-label-2="{ currentValue }">
<strong>{{ currentValue.guide.name }}</strong>
<em class="italic text-slate-400">
{{ ` - ${currentValue.guide.type}` }}
</em>
</template>
+
+ <template #selection-incomplete-message>
+ Please select a modification & guide on the left to visualise the
+ interaction.
+ </template>
</InteractionBoard>
</TabPanel>